Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RN7SL234P-201ENST00000485574 295 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 DUBR-204ENST00000490441 1149 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 ACOT9-207ENST00000492081 683 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 LUCAT1-201ENST00000511918 828 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 PINLYP-203ENST00000562255 569 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 AC087222.1-201ENST00000571113 504 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 AC090844.3-201ENST00000583462 784 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 H3F3B-212ENST00000592643 795 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 FAM205C-202ENST00000603592 468 ntAPPRIS ALT2 TSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 PLXNA4-203ENST00000378539 2004 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 LGMNP1-201ENST00000441282 1300 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 NEDD1-202ENST00000411739 2490 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 EFHC1-219ENST00000636379 1829 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 LINGO1-AS1-201ENST00000558691 1720 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 MVK-202ENST00000392727 1770 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 CXorf40A-206ENST00000428236 887 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 HTR3D-203ENST00000428798 1215 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC002451.1-202ENST00000432265 771 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 RPS19P3-201ENST00000480487 441 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 AC108471.2-202ENST00000529094 498 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 AP000753.1-201ENST00000542805 573 ntTSL 4 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC040977.2-201ENST00000572547 498 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 AL133396.2-201ENST00000617466 397 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 AL445989.1-201ENST00000611641 1436 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL6A3P12111 GJB1-202ENST00000374022 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 C12orf57-201ENST00000229281 560 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 AC073254.1-201ENST00000415506 1162 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 FRG2B-201ENST00000425520 890 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 MIR4435-2HG-212ENST00000444301 666 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A3P12111 BX571846.1-201ENST00000447347 553 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 AC099681.2-201ENST00000449899 543 ntTSL 4 BASIC13.22□□□□□ -0.29
COL6A3P12111 KRT42P-203ENST00000458343 671 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 AC068298.1-201ENST00000465165 161 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC007376.1-201ENST00000557720 604 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 AC066612.1-203ENST00000560623 481 ntTSL 4 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC135048.2-201ENST00000572471 561 ntTSL 4 BASIC13.22□□□□□ -0.29
COL6A3P12111 AC068491.3-201ENST00000603052 606 ntBASIC13.22□□□□□ -0.29
COL6A3P12111 NOP16-207ENST00000614830 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A3P12111 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
COL6A3P12111 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.21□□□□□ -0.29
COL6A3P12111 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 HLA-DQB1-203ENST00000399082 1219 ntBASIC13.21□□□□□ -0.29
COL6A3P12111 U2AF1L4-203ENST00000412391 904 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
COL6A3P12111 AC025252.1-201ENST00000535247 556 ntTSL 4 BASIC13.21□□□□□ -0.29
COL6A3P12111 AC011773.4-201ENST00000562577 487 ntTSL 2 BASIC13.21□□□□□ -0.29
COL6A3P12111 DCTN5-204ENST00000563998 878 ntTSL 3 BASIC13.21□□□□□ -0.29
COL6A3P12111 AC007533.1-201ENST00000564739 870 ntTSL 3 BASIC13.21□□□□□ -0.29
COL6A3P12111 ZNF548-209ENST00000598895 571 ntTSL 4 BASIC13.21□□□□□ -0.29
COL6A3P12111 AL355994.5-201ENST00000613591 236 ntBASIC13.21□□□□□ -0.29
COL6A3P12111 Metazoa_SRP.59-201ENST00000621376 277 ntBASIC13.21□□□□□ -0.29
COL6A3P12111 BMS1P4-201ENST00000441263 1332 ntBASIC13.21□□□□□ -0.29
COL6A3P12111 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL6A3P12111 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
COL6A3P12111 AOX3P-202ENST00000469595 1471 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 CDRT1-202ENST00000354433 1557 ntTSL 2 BASIC13.21□□□□□ -0.29
COL6A3P12111 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 PABPC1P2-201ENST00000471997 1805 ntBASIC13.21□□□□□ -0.29
COL6A3P12111 L3MBTL1-202ENST00000373134 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL6A3P12111 ZNRD1ASP-215ENST00000425604 1986 ntTSL 3 BASIC13.21□□□□□ -0.29
COL6A3P12111 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A3P12111 GSTM2-201ENST00000241337 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A3P12111 CST13P-202ENST00000400563 1157 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A3P12111 AC097638.1-201ENST00000413663 515 ntBASIC13.21□□□□□ -0.3
COL6A3P12111 AC079987.1-201ENST00000420181 123 ntBASIC13.21□□□□□ -0.3
COL6A3P12111 AC069285.1-201ENST00000450891 419 ntTSL 3 BASIC13.21□□□□□ -0.3
COL6A3P12111 ITIH4-AS1-201ENST00000478366 395 ntTSL 3 BASIC13.21□□□□□ -0.3
COL6A3P12111 SAA2-SAA4-201ENST00000524555 743 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
COL6A3P12111 WISP3-208ENST00000604763 1250 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
COL6A3P12111 EMG1-206ENST00000607161 1087 ntAPPRIS P5 TSL 2 BASIC13.21□□□□□ -0.3
COL6A3P12111 NEAT1_1.1-201ENST00000620348 120 ntBASIC13.21□□□□□ -0.3
COL6A3P12111 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL6A3P12111 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.21□□□□□ -0.3
COL6A3P12111 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
COL6A3P12111 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC13.21□□□□□ -0.3
COL6A3P12111 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms