Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
SMARCA1P28370 RET-205ENST00000615310 4337 ntTSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 DTX2P1-201ENST00000425797 1633 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 AFG3L2P1-201ENST00000521792 1763 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC15.32■□□□□ 0.04
SMARCA1P28370 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC15.32■□□□□ 0.04
SMARCA1P28370 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
SMARCA1P28370 BCL2L12P1-201ENST00000508390 733 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC15.32■□□□□ 0.04
SMARCA1P28370 IGHVII-74-1-201ENST00000517572 241 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC15.32■□□□□ 0.04
SMARCA1P28370 RPS5-204ENST00000598098 536 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.32■□□□□ 0.04
SMARCA1P28370 AC117500.5-201ENST00000623233 527 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 AC010531.8-201ENST00000623341 685 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 HSPA8P9-201ENST00000485881 1943 ntBASIC15.32■□□□□ 0.04
SMARCA1P28370 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 HAL-202ENST00000538703 2637 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SMARCA1P28370 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 PPARA-202ENST00000402126 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
SMARCA1P28370 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SMARCA1P28370 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 LILRB1-202ENST00000396315 2157 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 AP002761.4-201ENST00000565433 3361 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 ANKRD20A7P-201ENST00000402318 2414 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 HSD3BP1-201ENST00000286193 1111 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC004522.1-201ENST00000419978 654 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 KRT17P4-201ENST00000429445 819 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 RPL7AP53-201ENST00000468834 793 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 PRDX2P3-201ENST00000515779 586 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC15.31■□□□□ 0.04
SMARCA1P28370 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC15.31■□□□□ 0.04
SMARCA1P28370 ACTBP9-201ENST00000587663 1099 ntBASIC15.31■□□□□ 0.04
SMARCA1P28370 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AL592295.4-201ENST00000636161 997 ntTSL 4 BASIC15.31■□□□□ 0.04
SMARCA1P28370 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.31■□□□□ 0.04
SMARCA1P28370 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 EFHD1-204ENST00000410095 1538 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 RAP1A-201ENST00000356415 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 TAF7L-202ENST00000356784 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SMARCA1P28370 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
SMARCA1P28370 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms