Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC15.96■□□□□ 0.14
HMGB1P09429 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB1P09429 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB1P09429 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.96■□□□□ 0.14
HMGB1P09429 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HMGB1P09429 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 MYCNOS-202ENST00000641263 1313 ntBASIC15.95■□□□□ 0.14
HMGB1P09429 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB1P09429 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HMGB1P09429 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB1P09429 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC15.95■□□□□ 0.14
HMGB1P09429 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB1P09429 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB1P09429 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.95■□□□□ 0.14
HMGB1P09429 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB1P09429 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.95■□□□□ 0.14
HMGB1P09429 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB1P09429 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.95■□□□□ 0.14
HMGB1P09429 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HMGB1P09429 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
HMGB1P09429 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC15.95■□□□□ 0.14
HMGB1P09429 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC15.95■□□□□ 0.14
HMGB1P09429 SUPT20HL1-201ENST00000436466 2618 ntBASIC15.95■□□□□ 0.14
HMGB1P09429 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HMGB1P09429 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SRL-202ENST00000537996 1814 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 TP73-201ENST00000346387 4854 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 Z69890.1-201ENST00000382990 339 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 ACTG1P19-201ENST00000418987 1116 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC092638.2-201ENST00000441105 947 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 AC104212.2-201ENST00000478813 628 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 RN7SL23P-201ENST00000484055 275 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.94■□□□□ 0.14
HMGB1P09429 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC005041.3-201ENST00000606287 649 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 CSTP2-201ENST00000610599 398 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 AL356585.2-201ENST00000625078 2396 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
HMGB1P09429 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 UGT3A1-203ENST00000503189 1902 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 AC006144.1-201ENST00000424220 1600 ntBASIC15.94■□□□□ 0.14
HMGB1P09429 DDC-206ENST00000431062 1620 ntTSL 5 BASIC15.94■□□□□ 0.14
HMGB1P09429 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC15.94■□□□□ 0.14
HMGB1P09429 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HMGB1P09429 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC15.93■□□□□ 0.14
HMGB1P09429 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
HMGB1P09429 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 AP000229.1-201ENST00000608591 1979 ntTSL 4 BASIC15.93■□□□□ 0.14
HMGB1P09429 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms