Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC124068.2-201ENST00000569473 1109 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 IRF3-215ENST00000596822 823 ntTSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 MIR6720-201ENST00000611664 98 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CDK7-214ENST00000626796 358 ntTSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 KCNQ3-201ENST00000388996 11510 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 FAM225B-201ENST00000423546 5629 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC020917.4-201ENST00000623994 1999 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 CLTC-202ENST00000393043 5292 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 HCG27-204ENST00000424675 895 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ISCA2P1-201ENST00000425548 448 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 MIR4754-201ENST00000582477 89 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AL591471.1-201ENST00000621855 229 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC004923.1-202ENST00000642106 209 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC026271.4-201ENST00000578214 1833 ntBASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 FBXO22-201ENST00000308275 10725 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
PDLIM3Q53GG5 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms