Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 COL4A6-209ENST00000545689 6380 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 TBL1X-206ENST00000424279 5451 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AC090857.1-201ENST00000527400 390 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 DUX4L46-201ENST00000566845 751 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 RN7SL163P-201ENST00000583100 276 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 COX18-201ENST00000295890 6846 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 POC1B-GALNT4-202ENST00000548729 5436 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 NBPF1-203ENST00000430580 5932 ntAPPRIS P5 TSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 NBN-201ENST00000265433 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 FAS-202ENST00000352159 1722 ntTSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AL139385.1-201ENST00000611744 3272 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
PDLIM3Q53GG5 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AL358781.1-202ENST00000321081 1360 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ZNF773-205ENST00000599847 5832 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PCDHA6-201ENST00000378126 3267 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 FAHD2A-201ENST00000233379 4757 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AP000356.3-201ENST00000382243 753 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 ACTBP7-201ENST00000418351 1124 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AL354877.1-201ENST00000424412 413 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 PSMD4P1-201ENST00000433951 1109 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC018463.1-201ENST00000456674 917 ntBASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC11.42□□□□□ -0.58
PDLIM3Q53GG5 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms