Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC130686.1-201ENST00000622936 2466 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.31
COL28A1Q2UY09 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.15□□□□□ -0.31
COL28A1Q2UY09 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.15□□□□□ -0.31
COL28A1Q2UY09 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
COL28A1Q2UY09 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC019109.1-201ENST00000401725 1874 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FDPSP7-201ENST00000429043 1054 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 MST1L-204ENST00000545160 559 ntTSL 4 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC140658.4-201ENST00000561990 352 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AL009176.1-201ENST00000607876 650 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC13.14□□□□□ -0.31
COL28A1Q2UY09 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL28A1Q2UY09 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC131902.2-201ENST00000566892 2172 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 USP17L6P-201ENST00000382470 1197 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 KRT8P6-201ENST00000399259 1207 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC026884.1-201ENST00000418296 457 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 RN7SL351P-201ENST00000469306 248 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC008494.1-201ENST00000497612 796 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL28A1Q2UY09 ABCC6P1-203ENST00000565566 1170 ntBASIC13.13□□□□□ -0.31
COL28A1Q2UY09 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms