Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 RAP2CP1-201ENST00000605103 478 ntBASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHGA1Q9Y5H4 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 AC137761.2-201ENST00000561729 223 ntBASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 AC145350.3-201ENST00000569033 163 ntBASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
PCDHGA1Q9Y5H4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDHGA1Q9Y5H4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.45■■□□□ 1.03
PCDHGA1Q9Y5H4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.03
PCDHGA1Q9Y5H4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 CDCA4P2-201ENST00000441182 718 ntBASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 AC073111.5-205ENST00000641717 521 ntBASIC21.45■■□□□ 1.02
PCDHGA1Q9Y5H4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHGA1Q9Y5H4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHGA1Q9Y5H4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 AC026185.1-201ENST00000445748 174 ntBASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 KRT18P61-201ENST00000585825 1298 ntBASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 TPRG1LP1-201ENST00000598702 760 ntBASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PCDHGA1Q9Y5H4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHGA1Q9Y5H4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms