Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4BQ9Y4P1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
ATG4BQ9Y4P1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 SRD5A1P1-201ENST00000442297 786 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 AC099791.2-201ENST00000605725 427 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 AC241377.3-202ENST00000626088 1088 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 AC241585.3-202ENST00000628937 1088 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 AC245100.8-202ENST00000629247 1058 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.03■□□□□ 0.96
ATG4BQ9Y4P1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 AC006455.2-201ENST00000429931 906 ntBASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.02■□□□□ 0.96
ATG4BQ9Y4P1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 AC009086.3-201ENST00000623486 1008 ntBASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.01■□□□□ 0.95
ATG4BQ9Y4P1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 C1orf229-201ENST00000623686 2258 ntBASIC21■□□□□ 0.95
ATG4BQ9Y4P1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21■□□□□ 0.95
ATG4BQ9Y4P1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
ATG4BQ9Y4P1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.98■□□□□ 0.95
ATG4BQ9Y4P1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.97■□□□□ 0.95
ATG4BQ9Y4P1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms