Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 KRT16P3-201ENST00000439127 1283 ntBASIC17.95■□□□□ 0.46
FOXA2Q9Y261 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 UNC93B8-201ENST00000511903 705 ntBASIC17.95■□□□□ 0.46
FOXA2Q9Y261 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC17.95■□□□□ 0.46
FOXA2Q9Y261 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA2Q9Y261 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA2Q9Y261 AL353803.4-201ENST00000565882 1934 ntBASIC17.94■□□□□ 0.46
FOXA2Q9Y261 AC242852.2-201ENST00000615738 1807 ntBASIC17.93■□□□□ 0.46
FOXA2Q9Y261 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA2Q9Y261 REST-206ENST00000612429 1376 ntTSL 5 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 REST-207ENST00000616975 1370 ntTSL 5 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA2Q9Y261 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 LINC00565-201ENST00000562710 2331 ntBASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 AC005703.6-201ENST00000623265 1329 ntBASIC17.91■□□□□ 0.46
FOXA2Q9Y261 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.91■□□□□ 0.46
FOXA2Q9Y261 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.9■□□□□ 0.46
FOXA2Q9Y261 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
FOXA2Q9Y261 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
FOXA2Q9Y261 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
FOXA2Q9Y261 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
FOXA2Q9Y261 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms