Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.28■■□□□ 1
BRF2Q9HAW0 AC009086.3-201ENST00000623486 1008 ntBASIC21.28■■□□□ 1
BRF2Q9HAW0 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BRF2Q9HAW0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.28■■□□□ 1
BRF2Q9HAW0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.27■■□□□ 1
BRF2Q9HAW0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
BRF2Q9HAW0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
BRF2Q9HAW0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.27■■□□□ 1
BRF2Q9HAW0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BRF2Q9HAW0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.27■□□□□ 0.99
BRF2Q9HAW0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
BRF2Q9HAW0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
BRF2Q9HAW0 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
BRF2Q9HAW0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
BRF2Q9HAW0 GUSBP5-202ENST00000510805 1989 ntBASIC21.27■□□□□ 0.99
BRF2Q9HAW0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRF2Q9HAW0 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.26■□□□□ 0.99
BRF2Q9HAW0 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BRF2Q9HAW0 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
BRF2Q9HAW0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
BRF2Q9HAW0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 AC127496.7-201ENST00000625110 1798 ntBASIC21.25■□□□□ 0.99
BRF2Q9HAW0 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BRF2Q9HAW0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 KRT16P3-201ENST00000439127 1283 ntBASIC21.24■□□□□ 0.99
BRF2Q9HAW0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BRF2Q9HAW0 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF2Q9HAW0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.22■□□□□ 0.99
BRF2Q9HAW0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 GUSBP5-201ENST00000418136 578 ntBASIC21.22■□□□□ 0.99
BRF2Q9HAW0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF2Q9HAW0 ECEL1P1-201ENST00000373592 1742 ntBASIC21.21■□□□□ 0.99
BRF2Q9HAW0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 AL117332.1-201ENST00000622628 974 ntBASIC21.21■□□□□ 0.99
BRF2Q9HAW0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF2Q9HAW0 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
BRF2Q9HAW0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF2Q9HAW0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF2Q9HAW0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
BRF2Q9HAW0 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
BRF2Q9HAW0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms