Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 AC144652.1-201ENST00000609974 1624 ntBASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.35■■□□□ 1.49
TRAIPQ9BWF2 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 AC126544.1-201ENST00000580842 1059 ntBASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.34■■□□□ 1.49
TRAIPQ9BWF2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
TRAIPQ9BWF2 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC24.33■■□□□ 1.49
TRAIPQ9BWF2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
TRAIPQ9BWF2 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.48
TRAIPQ9BWF2 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
TRAIPQ9BWF2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
TRAIPQ9BWF2 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
TRAIPQ9BWF2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
TRAIPQ9BWF2 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 OR2I1P-207ENST00000453522 948 ntBASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 AC087623.3-201ENST00000607047 1098 ntBASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 LINC01529-204ENST00000636474 1715 ntBASIC24.32■■□□□ 1.48
TRAIPQ9BWF2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRAIPQ9BWF2 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 IGHV3-19-201ENST00000521488 291 ntBASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 AC104564.3-201ENST00000582367 638 ntBASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
TRAIPQ9BWF2 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 AC092666.2-201ENST00000613287 246 ntBASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.29■■□□□ 1.48
TRAIPQ9BWF2 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 TSPY26P-201ENST00000476365 1326 ntBASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
TRAIPQ9BWF2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.27■■□□□ 1.48
TRAIPQ9BWF2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
TRAIPQ9BWF2 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
TRAIPQ9BWF2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms