Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 AL353803.4-201ENST00000565882 1934 ntBASIC19.31■□□□□ 0.68
NKX3-1Q99801 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NKX3-1Q99801 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.31■□□□□ 0.68
NKX3-1Q99801 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NKX3-1Q99801 AC019171.1-201ENST00000601251 1056 ntBASIC19.3■□□□□ 0.68
NKX3-1Q99801 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 AL137060.1-201ENST00000618151 2648 ntBASIC19.3■□□□□ 0.68
NKX3-1Q99801 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.3■□□□□ 0.68
NKX3-1Q99801 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX3-1Q99801 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.29■□□□□ 0.68
NKX3-1Q99801 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.29■□□□□ 0.68
NKX3-1Q99801 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NKX3-1Q99801 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 AC022616.5-201ENST00000518796 181 ntBASIC19.28■□□□□ 0.68
NKX3-1Q99801 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 THA1P-201ENST00000590384 1145 ntBASIC19.28■□□□□ 0.68
NKX3-1Q99801 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.28■□□□□ 0.68
NKX3-1Q99801 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NKX3-1Q99801 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
NKX3-1Q99801 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX3-1Q99801 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.27■□□□□ 0.68
NKX3-1Q99801 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX3-1Q99801 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NKX3-1Q99801 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NKX3-1Q99801 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX3-1Q99801 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NKX3-1Q99801 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 AC080038.3-201ENST00000623346 1952 ntBASIC19.25■□□□□ 0.67
NKX3-1Q99801 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 AC074183.2-201ENST00000623112 922 ntBASIC19.25■□□□□ 0.67
NKX3-1Q99801 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX3-1Q99801 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX3-1Q99801 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX3-1Q99801 AC242852.2-201ENST00000615738 1807 ntBASIC19.24■□□□□ 0.67
NKX3-1Q99801 YBX1P4-201ENST00000392794 808 ntBASIC19.24■□□□□ 0.67
NKX3-1Q99801 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms