Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
RTF1Q92541 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RTF1Q92541 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
RTF1Q92541 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RTF1Q92541 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
RTF1Q92541 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
RTF1Q92541 AC026271.2-201ENST00000428091 497 ntBASIC29.1■■■□□ 2.25
RTF1Q92541 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
RTF1Q92541 TSPY26P-201ENST00000476365 1326 ntBASIC29.1■■■□□ 2.25
RTF1Q92541 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
RTF1Q92541 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
RTF1Q92541 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RTF1Q92541 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RTF1Q92541 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
RTF1Q92541 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
RTF1Q92541 AICDA-202ENST00000537228 667 ntTSL 5 BASIC29.09■■■□□ 2.25
RTF1Q92541 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.09■■■□□ 2.25
RTF1Q92541 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.09■■■□□ 2.25
RTF1Q92541 AL353803.4-201ENST00000565882 1934 ntBASIC29.09■■■□□ 2.25
RTF1Q92541 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RTF1Q92541 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
RTF1Q92541 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
RTF1Q92541 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
RTF1Q92541 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC29.08■■■□□ 2.25
RTF1Q92541 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
RTF1Q92541 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
RTF1Q92541 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC29.08■■■□□ 2.25
RTF1Q92541 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
RTF1Q92541 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.07■■■□□ 2.24
RTF1Q92541 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
RTF1Q92541 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
RTF1Q92541 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC29.07■■■□□ 2.24
RTF1Q92541 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC29.07■■■□□ 2.24
RTF1Q92541 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
RTF1Q92541 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
RTF1Q92541 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC29.06■■■□□ 2.24
RTF1Q92541 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC29.06■■■□□ 2.24
RTF1Q92541 IGHV3-19-201ENST00000521488 291 ntBASIC29.06■■■□□ 2.24
RTF1Q92541 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.05■■■□□ 2.24
RTF1Q92541 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC29.05■■■□□ 2.24
RTF1Q92541 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
RTF1Q92541 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
RTF1Q92541 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.05■■■□□ 2.24
RTF1Q92541 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
RTF1Q92541 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
RTF1Q92541 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC29.04■■■□□ 2.24
RTF1Q92541 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC29.04■■■□□ 2.24
RTF1Q92541 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
RTF1Q92541 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC29.04■■■□□ 2.24
RTF1Q92541 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.04■■■□□ 2.24
RTF1Q92541 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
RTF1Q92541 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC29.04■■■□□ 2.24
RTF1Q92541 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
RTF1Q92541 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
RTF1Q92541 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTF1Q92541 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC29.03■■■□□ 2.24
RTF1Q92541 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC29.03■■■□□ 2.24
RTF1Q92541 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
RTF1Q92541 JTB-203ENST00000368589 1216 ntTSL 2 BASIC29.03■■■□□ 2.24
RTF1Q92541 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.03■■■□□ 2.24
RTF1Q92541 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC29.03■■■□□ 2.24
RTF1Q92541 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC29.03■■■□□ 2.24
RTF1Q92541 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC29.03■■■□□ 2.24
RTF1Q92541 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC29.03■■■□□ 2.24
RTF1Q92541 STX4-202ENST00000394998 1498 ntTSL 2 BASIC29.03■■■□□ 2.24
RTF1Q92541 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC29.02■■■□□ 2.24
RTF1Q92541 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.02■■■□□ 2.24
RTF1Q92541 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
RTF1Q92541 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.02■■■□□ 2.24
RTF1Q92541 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.01■■■□□ 2.23
RTF1Q92541 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.23
RTF1Q92541 AC004687.1-201ENST00000579003 1625 ntBASIC29.01■■■□□ 2.23
RTF1Q92541 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
RTF1Q92541 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC29■■■□□ 2.23
RTF1Q92541 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC29■■■□□ 2.23
RTF1Q92541 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 MIR6821-201ENST00000617625 74 ntBASIC29■■■□□ 2.23
RTF1Q92541 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29■■■□□ 2.23
RTF1Q92541 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
RTF1Q92541 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC29■■■□□ 2.23
RTF1Q92541 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC29■■■□□ 2.23
RTF1Q92541 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29■■■□□ 2.23
RTF1Q92541 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC29■■■□□ 2.23
RTF1Q92541 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29■■■□□ 2.23
RTF1Q92541 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC29■■■□□ 2.23
RTF1Q92541 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
RTF1Q92541 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
RTF1Q92541 AC097381.1-201ENST00000429019 1296 ntBASIC28.99■■■□□ 2.23
RTF1Q92541 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
RTF1Q92541 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.99■■■□□ 2.23
RTF1Q92541 MIR5787-201ENST00000611784 55 ntBASIC28.99■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms