Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 WDR60-204ENST00000454771 812 ntTSL 419.74■□□□□ 0.751e-13■■■□□ 18.9
DDX55Q8NHQ9 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.171e-13■■■□□ 18.9
DDX55Q8NHQ9 WDR60-203ENST00000444851 2769 ntTSL 1 (best)13.98□□□□□ -0.171e-13■■■□□ 18.9
DDX55Q8NHQ9 WDR60-205ENST00000467220 5410 ntTSL 213.86□□□□□ -0.191e-13■■■□□ 18.9
DDX55Q8NHQ9 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.637e-14■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.852e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-208ENST00000470787 1544 ntTSL 226.18■■□□□ 1.782e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-203ENST00000412341 1916 ntTSL 524.72■■□□□ 1.552e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-211ENST00000477070 1521 ntTSL 524.61■■□□□ 1.532e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.162e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-210ENST00000476503 1006 ntAPPRIS ALT2 TSL 320.9■□□□□ 0.942e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.822e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-227ENST00000533927 2026 ntTSL 1 (best)19.91■□□□□ 0.782e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-206ENST00000463519 2704 ntTSL 1 (best)15.71■□□□□ 0.112e-7■■■□□ 18.9
DDX55Q8NHQ9 ZNF692-209ENST00000474351 867 ntTSL 211.59□□□□□ -0.552e-7■■■□□ 18.9
DDX55Q8NHQ9 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC19.23■□□□□ 0.672e-8■■■□□ 18.9
DDX55Q8NHQ9 LYPLA2-208ENST00000472213 822 ntTSL 319.07■□□□□ 0.642e-8■■■□□ 18.9
DDX55Q8NHQ9 AL365205.1-201ENST00000456057 3947 ntTSL 216.91■□□□□ 0.38e-12■■■□□ 18.8
DDX55Q8NHQ9 AL365205.1-203ENST00000335515 2871 ntTSL 214.19□□□□□ -0.148e-12■■■□□ 18.8
DDX55Q8NHQ9 AL365205.1-202ENST00000487182 3043 ntTSL 213.39□□□□□ -0.278e-12■■■□□ 18.8
DDX55Q8NHQ9 TOMM6-201ENST00000398881 595 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.628e-12■■■□□ 18.8
DDX55Q8NHQ9 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.018e-12■■■□□ 18.8
DDX55Q8NHQ9 TCF3-216ENST00000592395 996 ntTSL 522.54■■□□□ 1.24e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-215ENST00000590684 1313 ntTSL 320.02■□□□□ 0.84e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-211ENST00000587425 629 ntTSL 219.03■□□□□ 0.644e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-217ENST00000592628 1751 ntTSL 518.06■□□□□ 0.484e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.05■□□□□ 0.484e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-205ENST00000585731 1222 ntTSL 217.55■□□□□ 0.44e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-218ENST00000593064 2694 ntTSL 215.88■□□□□ 0.134e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.054e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.224e-7■■■□□ 18.8
DDX55Q8NHQ9 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC13.64□□□□□ -0.234e-7■■■□□ 18.8
DDX55Q8NHQ9 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.36e-7■■■□□ 18.8
DDX55Q8NHQ9 KIAA1109-207ENST00000438707 5528 ntTSL 56.25□□□□□ -1.416e-7■■■□□ 18.8
DDX55Q8NHQ9 KIAA1109-202ENST00000306802 4650 ntTSL 1 (best)4.17□□□□□ -1.746e-7■■■□□ 18.8
DDX55Q8NHQ9 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.786e-7■■■□□ 18.8
DDX55Q8NHQ9 MYDGF-202ENST00000596031 335 ntTSL 318.17■□□□□ 0.53e-10■■■□□ 18.8
DDX55Q8NHQ9 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 519.15■□□□□ 0.663e-6■■■□□ 18.8
DDX55Q8NHQ9 TAOK2-201ENST00000279394 4246 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.252e-17■■■□□ 18.8
DDX55Q8NHQ9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.48■■□□□ 1.678e-7■■■□□ 18.8
DDX55Q8NHQ9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.628e-7■■■□□ 18.8
DDX55Q8NHQ9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC24.01■■□□□ 1.435e-9■■■□□ 18.8
DDX55Q8NHQ9 YPEL3-206ENST00000565479 865 ntTSL 523.26■■□□□ 1.315e-9■■■□□ 18.8
DDX55Q8NHQ9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.245e-9■■■□□ 18.8
DDX55Q8NHQ9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.42■■□□□ 1.185e-9■■■□□ 18.8
DDX55Q8NHQ9 YPEL3-212ENST00000570099 669 ntTSL 316.51■□□□□ 0.231e-9■■■□□ 18.8
DDX55Q8NHQ9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.691e-7■■■□□ 18.8
DDX55Q8NHQ9 ARHGEF11-206ENST00000487682 4796 ntTSL 211.49□□□□□ -0.578e-7■■■□□ 18.7
DDX55Q8NHQ9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.181e-7■■■□□ 18.7
DDX55Q8NHQ9 TRIR-204ENST00000591254 988 ntTSL 231.9■■■□□ 2.72e-7■■■□□ 18.7
DDX55Q8NHQ9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC29.48■■■□□ 2.312e-7■■■□□ 18.7
DDX55Q8NHQ9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.28■■■□□ 2.122e-7■■■□□ 18.7
DDX55Q8NHQ9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.92e-7■■■□□ 18.7
DDX55Q8NHQ9 PDLIM1-204ENST00000492511 453 ntTSL 28.78□□□□□ -11e-15■■■□□ 18.7
DDX55Q8NHQ9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.223e-8■■■□□ 18.7
DDX55Q8NHQ9 DENND4B-208ENST00000480340 2530 ntTSL 215.98■□□□□ 0.155e-9■■■□□ 18.7
DDX55Q8NHQ9 ENO2-209ENST00000538763 1646 ntTSL 5 BASIC14.57□□□□□ -0.085e-8■■■□□ 18.7
DDX55Q8NHQ9 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.226e-15■■■□□ 18.6
DDX55Q8NHQ9 TMA7-202ENST00000477624 619 ntTSL 1 (best)26.63■■□□□ 1.852e-10■■■□□ 18.6
DDX55Q8NHQ9 TMA7-203ENST00000479126 688 ntTSL 224.77■■□□□ 1.562e-10■■■□□ 18.6
DDX55Q8NHQ9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.252e-10■■■□□ 18.6
DDX55Q8NHQ9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.431e-6■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.45■■■□□ 2.153e-9■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.773e-9■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.753e-9■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.573e-9■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.94■□□□□ 0.623e-9■■■□□ 18.6
DDX55Q8NHQ9 PNKP-223ENST00000629179 811 ntTSL 417.37■□□□□ 0.373e-9■■■□□ 18.6
DDX55Q8NHQ9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.133e-9■■■□□ 18.6
DDX55Q8NHQ9 RHOC-210ENST00000425265 866 ntTSL 323.7■■□□□ 1.388e-7■■■□□ 18.6
DDX55Q8NHQ9 RHOC-219ENST00000534717 574 ntTSL 318.11■□□□□ 0.498e-7■■■□□ 18.6
DDX55Q8NHQ9 FIS1-209ENST00000482199 731 ntTSL 321.17■□□□□ 0.987e-12■■■□□ 18.6
DDX55Q8NHQ9 FIS1-205ENST00000463406 527 ntTSL 311.42□□□□□ -0.587e-12■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-209ENST00000630114 1433 ntTSL 525.17■■□□□ 1.623e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-203ENST00000502762 2356 ntTSL 1 (best)22.05■■□□□ 1.123e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 13e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.863e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-202ENST00000349655 1402 ntTSL 1 (best)20.28■□□□□ 0.843e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.173e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC14.48□□□□□ -0.093e-48■■■□□ 18.6
DDX55Q8NHQ9 TCEAL9-202ENST00000372661 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.131e-6■■■□□ 18.6
DDX55Q8NHQ9 TCEAL9-201ENST00000372656 992 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.131e-6■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-201ENST00000295470 3781 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.573e-48■■■□□ 18.6
DDX55Q8NHQ9 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.763e-48■■■□□ 18.6
DDX55Q8NHQ9 CTSD-214ENST00000637937 1262 ntTSL 520.86■□□□□ 0.931e-19■■■□□ 18.6
DDX55Q8NHQ9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.791e-19■■■□□ 18.6
DDX55Q8NHQ9 AC068580.4-204ENST00000427721 1007 ntTSL 219.79■□□□□ 0.761e-19■■■□□ 18.6
DDX55Q8NHQ9 AC068580.4-202ENST00000636579 350 ntTSL 318.72■□□□□ 0.591e-19■■■□□ 18.6
DDX55Q8NHQ9 CTSD-204ENST00000433655 2006 ntTSL 518.32■□□□□ 0.521e-19■■■□□ 18.6
DDX55Q8NHQ9 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.491e-19■■■□□ 18.6
DDX55Q8NHQ9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.381e-19■■■□□ 18.6
DDX55Q8NHQ9 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.231e-19■■■□□ 18.6
DDX55Q8NHQ9 AC068580.4-203ENST00000636397 4038 ntAPPRIS P5 TSL 5 BASIC12.33□□□□□ -0.441e-19■■■□□ 18.6
DDX55Q8NHQ9 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.033e-33■■■□□ 18.6
DDX55Q8NHQ9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.785e-12■■■□□ 18.6
DDX55Q8NHQ9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.725e-12■■■□□ 18.6
DDX55Q8NHQ9 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.095e-12■■■□□ 18.6
DDX55Q8NHQ9 KRT10-202ENST00000635956 583 ntTSL 226.88■■□□□ 1.894e-26■■■□□ 18.6
DDX55Q8NHQ9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.694e-26■■■□□ 18.6
DDX55Q8NHQ9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.942e-6■■■□□ 18.5
Retrieved 100 of 15,504 protein–RNA pairs in 125.7 ms