Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.58■□□□□ 0.89
BEST3Q8N1M1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.58■□□□□ 0.88
BEST3Q8N1M1 AC004812.2-201ENST00000611079 2094 ntBASIC20.58■□□□□ 0.88
BEST3Q8N1M1 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
BEST3Q8N1M1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
BEST3Q8N1M1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
BEST3Q8N1M1 AC133637.1-201ENST00000624115 1537 ntBASIC20.58■□□□□ 0.88
BEST3Q8N1M1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 AC126544.1-201ENST00000580842 1059 ntBASIC20.57■□□□□ 0.88
BEST3Q8N1M1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
BEST3Q8N1M1 AC144652.1-201ENST00000609974 1624 ntBASIC20.56■□□□□ 0.88
BEST3Q8N1M1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 IRS3P-201ENST00000223076 1006 ntBASIC20.56■□□□□ 0.88
BEST3Q8N1M1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 DUX4L4-201ENST00000566884 1269 ntBASIC20.56■□□□□ 0.88
BEST3Q8N1M1 AL499627.2-201ENST00000606283 725 ntBASIC20.56■□□□□ 0.88
BEST3Q8N1M1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
BEST3Q8N1M1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
BEST3Q8N1M1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 LINC01529-204ENST00000636474 1715 ntBASIC20.54■□□□□ 0.88
BEST3Q8N1M1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.54■□□□□ 0.88
BEST3Q8N1M1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.53■□□□□ 0.88
BEST3Q8N1M1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BEST3Q8N1M1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.52■□□□□ 0.88
BEST3Q8N1M1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.52■□□□□ 0.87
BEST3Q8N1M1 AC133561.1-201ENST00000568600 2415 ntBASIC20.52■□□□□ 0.87
BEST3Q8N1M1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
BEST3Q8N1M1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
BEST3Q8N1M1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 MIR5787-201ENST00000611784 55 ntBASIC20.51■□□□□ 0.87
BEST3Q8N1M1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BEST3Q8N1M1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms