Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VRK3Q8IV63 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.79■■□□□ 1.08
VRK3Q8IV63 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.78■■□□□ 1.08
VRK3Q8IV63 AC068473.5-201ENST00000616428 2072 ntBASIC21.78■■□□□ 1.08
VRK3Q8IV63 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.78■■□□□ 1.08
VRK3Q8IV63 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
VRK3Q8IV63 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VRK3Q8IV63 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
VRK3Q8IV63 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VRK3Q8IV63 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.78■■□□□ 1.08
VRK3Q8IV63 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
VRK3Q8IV63 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VRK3Q8IV63 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VRK3Q8IV63 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.77■■□□□ 1.08
VRK3Q8IV63 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VRK3Q8IV63 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VRK3Q8IV63 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.77■■□□□ 1.07
VRK3Q8IV63 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
VRK3Q8IV63 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 pRNA.6-201ENST00000610482 90 ntBASIC21.76■■□□□ 1.07
VRK3Q8IV63 pRNA.5-201ENST00000612139 90 ntBASIC21.76■■□□□ 1.07
VRK3Q8IV63 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 pRNA.11-201ENST00000618423 90 ntBASIC21.76■■□□□ 1.07
VRK3Q8IV63 pRNA.13-201ENST00000619112 90 ntBASIC21.76■■□□□ 1.07
VRK3Q8IV63 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
VRK3Q8IV63 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VRK3Q8IV63 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
VRK3Q8IV63 AC133561.1-201ENST00000568600 2415 ntBASIC21.75■■□□□ 1.07
VRK3Q8IV63 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VRK3Q8IV63 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VRK3Q8IV63 MIR3181-201ENST00000578512 73 ntBASIC21.75■■□□□ 1.07
VRK3Q8IV63 AL499627.2-201ENST00000606283 725 ntBASIC21.75■■□□□ 1.07
VRK3Q8IV63 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VRK3Q8IV63 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VRK3Q8IV63 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.75■■□□□ 1.07
VRK3Q8IV63 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VRK3Q8IV63 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
VRK3Q8IV63 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 SERBP1P1-201ENST00000396021 1160 ntBASIC21.73■■□□□ 1.07
VRK3Q8IV63 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VRK3Q8IV63 C1orf229-201ENST00000623686 2258 ntBASIC21.73■■□□□ 1.07
VRK3Q8IV63 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VRK3Q8IV63 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VRK3Q8IV63 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VRK3Q8IV63 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.72■■□□□ 1.07
VRK3Q8IV63 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VRK3Q8IV63 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VRK3Q8IV63 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VRK3Q8IV63 AC004687.1-201ENST00000579003 1625 ntBASIC21.72■■□□□ 1.07
VRK3Q8IV63 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms