Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 AC144652.1-201ENST00000609974 1624 ntBASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 AC016769.1-201ENST00000409132 1010 ntBASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CNKSR3Q6P9H4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 AC137761.2-201ENST00000561729 223 ntBASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 AC145350.3-201ENST00000569033 163 ntBASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 AP003733.4-201ENST00000623785 1697 ntBASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CNKSR3Q6P9H4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 RAP2CP1-201ENST00000605103 478 ntBASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.22■■□□□ 1.47
CNKSR3Q6P9H4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 TPRG1LP1-201ENST00000598702 760 ntBASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CNKSR3Q6P9H4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
CNKSR3Q6P9H4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
CNKSR3Q6P9H4 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
CNKSR3Q6P9H4 AC135731.1-201ENST00000569415 2548 ntBASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 CDCA4P2-201ENST00000441182 718 ntBASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 AC073111.5-205ENST00000641717 521 ntBASIC24.19■■□□□ 1.46
CNKSR3Q6P9H4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CNKSR3Q6P9H4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
CNKSR3Q6P9H4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.16■■□□□ 1.46
CNKSR3Q6P9H4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
CNKSR3Q6P9H4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.16■■□□□ 1.46
CNKSR3Q6P9H4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms