Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RPUSD3Q6P087 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 AP005435.1-201ENST00000529293 1178 ntBASIC20.3■□□□□ 0.84
RPUSD3Q6P087 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 RARRES2P11-201ENST00000635158 484 ntBASIC20.3■□□□□ 0.84
RPUSD3Q6P087 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPUSD3Q6P087 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 AL137784.2-201ENST00000607332 1000 ntBASIC20.29■□□□□ 0.84
RPUSD3Q6P087 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.29■□□□□ 0.84
RPUSD3Q6P087 AL139125.2-201ENST00000623134 1869 ntBASIC20.28■□□□□ 0.84
RPUSD3Q6P087 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPUSD3Q6P087 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPUSD3Q6P087 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RPUSD3Q6P087 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RPUSD3Q6P087 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.27■□□□□ 0.83
RPUSD3Q6P087 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 AC090192.1-201ENST00000517740 490 ntBASIC20.26■□□□□ 0.83
RPUSD3Q6P087 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.26■□□□□ 0.83
RPUSD3Q6P087 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 IKBKGP1-201ENST00000612193 1073 ntBASIC20.25■□□□□ 0.83
RPUSD3Q6P087 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPUSD3Q6P087 LINC01529-204ENST00000636474 1715 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms