Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC28.47■■■□□ 2.15
RC3H1Q5TC82 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 AC073111.5-205ENST00000641717 521 ntBASIC28.46■■■□□ 2.15
RC3H1Q5TC82 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 LINC01529-204ENST00000636474 1715 ntBASIC28.46■■■□□ 2.15
RC3H1Q5TC82 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RC3H1Q5TC82 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 AC144652.1-201ENST00000609974 1624 ntBASIC28.45■■■□□ 2.14
RC3H1Q5TC82 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 HSCB-202ENST00000398941 955 ntTSL 2 BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
RC3H1Q5TC82 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 AC137761.2-201ENST00000561729 223 ntBASIC28.44■■■□□ 2.14
RC3H1Q5TC82 AC145350.3-201ENST00000569033 163 ntBASIC28.44■■■□□ 2.14
RC3H1Q5TC82 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RC3H1Q5TC82 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 AP004607.4-201ENST00000530158 1459 ntBASIC28.43■■■□□ 2.14
RC3H1Q5TC82 STX7-201ENST00000367937 1090 ntTSL 5 BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.43■■■□□ 2.14
RC3H1Q5TC82 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.43■■■□□ 2.14
RC3H1Q5TC82 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 AC016769.1-201ENST00000409132 1010 ntBASIC28.42■■■□□ 2.14
RC3H1Q5TC82 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.42■■■□□ 2.14
RC3H1Q5TC82 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
RC3H1Q5TC82 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
RC3H1Q5TC82 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.41■■■□□ 2.14
RC3H1Q5TC82 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.41■■■□□ 2.14
RC3H1Q5TC82 EI24-213ENST00000618552 1747 ntTSL 5 BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RC3H1Q5TC82 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RC3H1Q5TC82 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.39■■■□□ 2.14
RC3H1Q5TC82 AP003733.4-201ENST00000623785 1697 ntBASIC28.39■■■□□ 2.14
RC3H1Q5TC82 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
RC3H1Q5TC82 AC026185.1-201ENST00000445748 174 ntBASIC28.39■■■□□ 2.14
RC3H1Q5TC82 DBI-210ENST00000542275 757 ntTSL 5 BASIC28.39■■■□□ 2.14
RC3H1Q5TC82 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
RC3H1Q5TC82 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.38■■■□□ 2.13
RC3H1Q5TC82 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.38■■■□□ 2.13
RC3H1Q5TC82 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC28.38■■■□□ 2.13
RC3H1Q5TC82 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 COX20-201ENST00000366528 568 ntTSL 2 BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.37■■■□□ 2.13
RC3H1Q5TC82 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RC3H1Q5TC82 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.36■■■□□ 2.13
RC3H1Q5TC82 AC004854.2-201ENST00000608450 1441 ntBASIC28.35■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms