Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CL1P78423 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CL1P78423 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 AL356740.2-201ENST00000601559 647 ntBASIC17.83■□□□□ 0.44
CX3CL1P78423 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CL1P78423 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
CX3CL1P78423 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CX3CL1P78423 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CX3CL1P78423 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CL1P78423 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CX3CL1P78423 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.82■□□□□ 0.44
CX3CL1P78423 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 C9orf163-202ENST00000624034 2573 ntBASIC17.82■□□□□ 0.44
CX3CL1P78423 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.82■□□□□ 0.44
CX3CL1P78423 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CX3CL1P78423 AC009102.2-201ENST00000606772 1639 ntBASIC17.82■□□□□ 0.44
CX3CL1P78423 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CX3CL1P78423 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CL1P78423 AC079630.1-202ENST00000618127 1840 ntBASIC17.82■□□□□ 0.44
CX3CL1P78423 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.81■□□□□ 0.44
CX3CL1P78423 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC17.81■□□□□ 0.44
CX3CL1P78423 AL117332.1-201ENST00000622628 974 ntBASIC17.81■□□□□ 0.44
CX3CL1P78423 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.81■□□□□ 0.44
CX3CL1P78423 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CX3CL1P78423 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.8■□□□□ 0.44
CX3CL1P78423 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CL1P78423 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.8■□□□□ 0.44
CX3CL1P78423 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CL1P78423 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.8■□□□□ 0.44
CX3CL1P78423 MIR3621-201ENST00000580529 85 ntBASIC17.8■□□□□ 0.44
CX3CL1P78423 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.8■□□□□ 0.44
CX3CL1P78423 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CX3CL1P78423 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CX3CL1P78423 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CX3CL1P78423 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.79■□□□□ 0.44
CX3CL1P78423 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.79■□□□□ 0.44
CX3CL1P78423 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.79■□□□□ 0.44
CX3CL1P78423 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CX3CL1P78423 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CX3CL1P78423 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CX3CL1P78423 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.78■□□□□ 0.44
CX3CL1P78423 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.78■□□□□ 0.44
CX3CL1P78423 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.78■□□□□ 0.44
CX3CL1P78423 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
CX3CL1P78423 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.77■□□□□ 0.44
CX3CL1P78423 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CX3CL1P78423 AC144652.1-201ENST00000609974 1624 ntBASIC17.77■□□□□ 0.44
CX3CL1P78423 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CX3CL1P78423 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
CX3CL1P78423 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CX3CL1P78423 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CX3CL1P78423 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CX3CL1P78423 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CX3CL1P78423 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CX3CL1P78423 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CX3CL1P78423 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CX3CL1P78423 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.76■□□□□ 0.43
CX3CL1P78423 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CX3CL1P78423 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms