Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 ZNRF2P2-203ENST00000454624 420 ntBASIC16.64■□□□□ 0.25
FOXA3P55318 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC16.64■□□□□ 0.25
FOXA3P55318 AC060814.1-201ENST00000554326 538 ntBASIC16.64■□□□□ 0.25
FOXA3P55318 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC16.64■□□□□ 0.25
FOXA3P55318 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC16.64■□□□□ 0.25
FOXA3P55318 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
FOXA3P55318 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
FOXA3P55318 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FOXA3P55318 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
FOXA3P55318 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
FOXA3P55318 AL022069.1-201ENST00000568025 1636 ntBASIC16.63■□□□□ 0.25
FOXA3P55318 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA3P55318 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 FBXW4P1-201ENST00000426721 2239 ntBASIC16.62■□□□□ 0.25
FOXA3P55318 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
FOXA3P55318 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
FOXA3P55318 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC16.62■□□□□ 0.25
FOXA3P55318 AC093536.1-201ENST00000569153 554 ntBASIC16.62■□□□□ 0.25
FOXA3P55318 METRNL-202ENST00000570778 967 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA3P55318 AC092296.2-201ENST00000589470 999 ntBASIC16.62■□□□□ 0.25
FOXA3P55318 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
FOXA3P55318 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FOXA3P55318 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.62■□□□□ 0.25
FOXA3P55318 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.61■□□□□ 0.25
FOXA3P55318 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
FOXA3P55318 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC16.61■□□□□ 0.25
FOXA3P55318 RPS2P35-201ENST00000443417 897 ntBASIC16.61■□□□□ 0.25
FOXA3P55318 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
FOXA3P55318 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.61■□□□□ 0.25
FOXA3P55318 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
FOXA3P55318 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FOXA3P55318 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FOXA3P55318 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
FOXA3P55318 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
FOXA3P55318 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.6■□□□□ 0.25
FOXA3P55318 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.6■□□□□ 0.25
FOXA3P55318 ECEL1P2-201ENST00000461596 1295 ntBASIC16.6■□□□□ 0.25
FOXA3P55318 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.6■□□□□ 0.25
FOXA3P55318 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
FOXA3P55318 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC16.6■□□□□ 0.25
FOXA3P55318 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
FOXA3P55318 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FOXA3P55318 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 AC073130.3-201ENST00000624389 2278 ntBASIC16.59■□□□□ 0.25
FOXA3P55318 ALDH1A3-203ENST00000557963 1670 ntBASIC16.59■□□□□ 0.25
FOXA3P55318 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.59■□□□□ 0.25
FOXA3P55318 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
FOXA3P55318 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA3P55318 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
FOXA3P55318 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC16.59■□□□□ 0.25
FOXA3P55318 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC16.59■□□□□ 0.25
FOXA3P55318 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
FOXA3P55318 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
FOXA3P55318 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
FOXA3P55318 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.58■□□□□ 0.25
FOXA3P55318 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.58■□□□□ 0.25
FOXA3P55318 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA3P55318 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
FOXA3P55318 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
FOXA3P55318 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
FOXA3P55318 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms