Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.8■□□□□ 0.92
RFX3P48380 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
RFX3P48380 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX3P48380 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.8■□□□□ 0.92
RFX3P48380 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RFX3P48380 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.8■□□□□ 0.92
RFX3P48380 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RFX3P48380 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.79■□□□□ 0.92
RFX3P48380 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.79■□□□□ 0.92
RFX3P48380 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RFX3P48380 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RFX3P48380 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RFX3P48380 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.78■□□□□ 0.92
RFX3P48380 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.78■□□□□ 0.92
RFX3P48380 AC092068.2-201ENST00000590491 1708 ntBASIC20.78■□□□□ 0.92
RFX3P48380 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RFX3P48380 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
RFX3P48380 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
RFX3P48380 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX3P48380 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.77■□□□□ 0.92
RFX3P48380 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.77■□□□□ 0.92
RFX3P48380 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
RFX3P48380 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.77■□□□□ 0.92
RFX3P48380 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RFX3P48380 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.77■□□□□ 0.91
RFX3P48380 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
RFX3P48380 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX3P48380 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
RFX3P48380 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.76■□□□□ 0.91
RFX3P48380 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
RFX3P48380 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RFX3P48380 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
RFX3P48380 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX3P48380 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX3P48380 AL356740.2-201ENST00000601559 647 ntBASIC20.75■□□□□ 0.91
RFX3P48380 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.75■□□□□ 0.91
RFX3P48380 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX3P48380 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RFX3P48380 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.75■□□□□ 0.91
RFX3P48380 AC009102.2-201ENST00000606772 1639 ntBASIC20.75■□□□□ 0.91
RFX3P48380 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.74■□□□□ 0.91
RFX3P48380 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.74■□□□□ 0.91
RFX3P48380 AL117332.1-201ENST00000622628 974 ntBASIC20.74■□□□□ 0.91
RFX3P48380 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 AL353803.4-201ENST00000565882 1934 ntBASIC20.74■□□□□ 0.91
RFX3P48380 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
RFX3P48380 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RFX3P48380 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.73■□□□□ 0.91
RFX3P48380 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
RFX3P48380 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.73■□□□□ 0.91
RFX3P48380 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
RFX3P48380 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RFX3P48380 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RFX3P48380 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RFX3P48380 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.73■□□□□ 0.91
RFX3P48380 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.73■□□□□ 0.91
RFX3P48380 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.73■□□□□ 0.91
RFX3P48380 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.73■□□□□ 0.91
RFX3P48380 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RFX3P48380 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.72■□□□□ 0.91
RFX3P48380 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.72■□□□□ 0.91
RFX3P48380 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.72■□□□□ 0.91
RFX3P48380 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RFX3P48380 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.71■□□□□ 0.91
RFX3P48380 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
RFX3P48380 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 AC144652.1-201ENST00000609974 1624 ntBASIC20.71■□□□□ 0.91
RFX3P48380 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RFX3P48380 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RFX3P48380 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.7■□□□□ 0.9
RFX3P48380 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RFX3P48380 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.7■□□□□ 0.9
RFX3P48380 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.7■□□□□ 0.9
RFX3P48380 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RFX3P48380 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.7■□□□□ 0.9
RFX3P48380 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RFX3P48380 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms