Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.43■■□□□ 1.18
CXCL12P48061 BID-214ENST00000617586 542 ntTSL 5 BASIC22.43■■□□□ 1.18
CXCL12P48061 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.42■■□□□ 1.18
CXCL12P48061 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
CXCL12P48061 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.42■■□□□ 1.18
CXCL12P48061 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
CXCL12P48061 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CXCL12P48061 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.42■■□□□ 1.18
CXCL12P48061 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.42■■□□□ 1.18
CXCL12P48061 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.42■■□□□ 1.18
CXCL12P48061 AC104771.1-201ENST00000603335 964 ntBASIC22.42■■□□□ 1.18
CXCL12P48061 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.42■■□□□ 1.18
CXCL12P48061 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.42■■□□□ 1.18
CXCL12P48061 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.42■■□□□ 1.18
CXCL12P48061 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
CXCL12P48061 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CXCL12P48061 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.41■■□□□ 1.18
CXCL12P48061 AP004607.4-201ENST00000530158 1459 ntBASIC22.41■■□□□ 1.18
CXCL12P48061 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CXCL12P48061 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.4■■□□□ 1.18
CXCL12P48061 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.4■■□□□ 1.18
CXCL12P48061 AC006970.2-201ENST00000450065 779 ntBASIC22.4■■□□□ 1.18
CXCL12P48061 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CXCL12P48061 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.4■■□□□ 1.18
CXCL12P48061 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.4■■□□□ 1.18
CXCL12P48061 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.4■■□□□ 1.18
CXCL12P48061 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.39■■□□□ 1.18
CXCL12P48061 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CXCL12P48061 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
CXCL12P48061 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CXCL12P48061 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CXCL12P48061 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CXCL12P48061 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CXCL12P48061 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CXCL12P48061 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.39■■□□□ 1.17
CXCL12P48061 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.39■■□□□ 1.17
CXCL12P48061 TPRG1LP1-201ENST00000598702 760 ntBASIC22.39■■□□□ 1.17
CXCL12P48061 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CXCL12P48061 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.39■■□□□ 1.17
CXCL12P48061 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
CXCL12P48061 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
CXCL12P48061 LINC01529-204ENST00000636474 1715 ntBASIC22.38■■□□□ 1.17
CXCL12P48061 ABHD17AP1-201ENST00000358206 933 ntBASIC22.38■■□□□ 1.17
CXCL12P48061 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CXCL12P48061 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CXCL12P48061 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.38■■□□□ 1.17
CXCL12P48061 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.38■■□□□ 1.17
CXCL12P48061 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.38■■□□□ 1.17
CXCL12P48061 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.38■■□□□ 1.17
CXCL12P48061 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.38■■□□□ 1.17
CXCL12P48061 AL109923.1-201ENST00000618799 583 ntBASIC22.38■■□□□ 1.17
CXCL12P48061 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.38■■□□□ 1.17
CXCL12P48061 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CXCL12P48061 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CXCL12P48061 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CXCL12P48061 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.38■■□□□ 1.17
CXCL12P48061 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CXCL12P48061 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CXCL12P48061 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC22.37■■□□□ 1.17
CXCL12P48061 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CXCL12P48061 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
CXCL12P48061 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CXCL12P48061 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CXCL12P48061 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.36■■□□□ 1.17
CXCL12P48061 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CXCL12P48061 AL355802.2-201ENST00000402069 882 ntBASIC22.36■■□□□ 1.17
CXCL12P48061 KRT19P1-201ENST00000405746 1186 ntBASIC22.36■■□□□ 1.17
CXCL12P48061 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.36■■□□□ 1.17
CXCL12P48061 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.36■■□□□ 1.17
CXCL12P48061 AC004854.2-201ENST00000608450 1441 ntBASIC22.36■■□□□ 1.17
CXCL12P48061 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.36■■□□□ 1.17
CXCL12P48061 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
CXCL12P48061 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.35■■□□□ 1.17
CXCL12P48061 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
CXCL12P48061 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.35■■□□□ 1.17
CXCL12P48061 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CXCL12P48061 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.35■■□□□ 1.17
CXCL12P48061 AC145676.1-201ENST00000514988 2004 ntBASIC22.35■■□□□ 1.17
CXCL12P48061 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CXCL12P48061 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms