Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX1P47902 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX1P47902 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX1P47902 SNX5-217ENST00000606557 1087 ntBASIC17.96■□□□□ 0.47
CDX1P47902 MIR6722-201ENST00000617286 78 ntBASIC17.96■□□□□ 0.47
CDX1P47902 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX1P47902 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX1P47902 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CDX1P47902 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CDX1P47902 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.95■□□□□ 0.46
CDX1P47902 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CDX1P47902 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CDX1P47902 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.95■□□□□ 0.46
CDX1P47902 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
CDX1P47902 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.95■□□□□ 0.46
CDX1P47902 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.95■□□□□ 0.46
CDX1P47902 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC17.95■□□□□ 0.46
CDX1P47902 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CDX1P47902 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDX1P47902 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
CDX1P47902 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 AC141586.4-201ENST00000624558 1573 ntBASIC17.94■□□□□ 0.46
CDX1P47902 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX1P47902 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX1P47902 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX1P47902 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX1P47902 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 LSM4-201ENST00000252816 986 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX1P47902 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.93■□□□□ 0.46
CDX1P47902 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC17.93■□□□□ 0.46
CDX1P47902 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC17.93■□□□□ 0.46
CDX1P47902 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX1P47902 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CDX1P47902 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX1P47902 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CDX1P47902 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX1P47902 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CDX1P47902 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CDX1P47902 AC004448.1-201ENST00000458332 883 ntBASIC17.92■□□□□ 0.46
CDX1P47902 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.92■□□□□ 0.46
CDX1P47902 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.92■□□□□ 0.46
CDX1P47902 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX1P47902 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX1P47902 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 AC073130.3-201ENST00000624389 2278 ntBASIC17.92■□□□□ 0.46
CDX1P47902 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CDX1P47902 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX1P47902 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX1P47902 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.91■□□□□ 0.46
CDX1P47902 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX1P47902 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX1P47902 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX1P47902 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX1P47902 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX1P47902 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms