Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
SOX3P41225 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SOX3P41225 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SOX3P41225 C17orf82-201ENST00000623772 1530 ntBASIC20.82■□□□□ 0.92
SOX3P41225 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
SOX3P41225 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SOX3P41225 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.81■□□□□ 0.92
SOX3P41225 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.81■□□□□ 0.92
SOX3P41225 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX3P41225 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
SOX3P41225 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SOX3P41225 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SOX3P41225 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.8■□□□□ 0.92
SOX3P41225 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SOX3P41225 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SOX3P41225 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SOX3P41225 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SOX3P41225 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SOX3P41225 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
SOX3P41225 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SOX3P41225 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.79■□□□□ 0.92
SOX3P41225 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.79■□□□□ 0.92
SOX3P41225 AC099791.2-201ENST00000605725 427 ntBASIC20.79■□□□□ 0.92
SOX3P41225 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.79■□□□□ 0.92
SOX3P41225 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SOX3P41225 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.78■□□□□ 0.92
SOX3P41225 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.78■□□□□ 0.92
SOX3P41225 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 UNC93B3-201ENST00000308076 687 ntBASIC20.78■□□□□ 0.92
SOX3P41225 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 MIR638-201ENST00000385237 100 ntBASIC20.78■□□□□ 0.92
SOX3P41225 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.78■□□□□ 0.92
SOX3P41225 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SOX3P41225 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SOX3P41225 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SOX3P41225 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SOX3P41225 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.77■□□□□ 0.92
SOX3P41225 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.77■□□□□ 0.92
SOX3P41225 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.77■□□□□ 0.92
SOX3P41225 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
SOX3P41225 EP400NL-214ENST00000641289 2402 ntBASIC20.77■□□□□ 0.92
SOX3P41225 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SOX3P41225 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SOX3P41225 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SOX3P41225 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SOX3P41225 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SOX3P41225 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 AC092171.4-201ENST00000609130 632 ntBASIC20.76■□□□□ 0.91
SOX3P41225 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SOX3P41225 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SOX3P41225 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX3P41225 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.75■□□□□ 0.91
SOX3P41225 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.75■□□□□ 0.91
SOX3P41225 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.75■□□□□ 0.91
SOX3P41225 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 PBX2P1-201ENST00000493219 1291 ntBASIC20.75■□□□□ 0.91
SOX3P41225 AL136162.1-201ENST00000607711 1078 ntBASIC20.75■□□□□ 0.91
SOX3P41225 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX3P41225 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms