Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.32■■■□□ 2.12
RFC4P35249 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC28.32■■■□□ 2.12
RFC4P35249 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
RFC4P35249 GAS2L1P2-201ENST00000436355 1356 ntBASIC28.32■■■□□ 2.12
RFC4P35249 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC28.32■■■□□ 2.12
RFC4P35249 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
RFC4P35249 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.32■■■□□ 2.12
RFC4P35249 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
RFC4P35249 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RFC4P35249 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
RFC4P35249 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.31■■■□□ 2.12
RFC4P35249 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.31■■■□□ 2.12
RFC4P35249 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC28.31■■■□□ 2.12
RFC4P35249 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RFC4P35249 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.31■■■□□ 2.12
RFC4P35249 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RFC4P35249 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RFC4P35249 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RFC4P35249 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
RFC4P35249 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.3■■■□□ 2.12
RFC4P35249 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.3■■■□□ 2.12
RFC4P35249 STX7-201ENST00000367937 1090 ntTSL 5 BASIC28.3■■■□□ 2.12
RFC4P35249 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.3■■■□□ 2.12
RFC4P35249 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.3■■■□□ 2.12
RFC4P35249 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.3■■■□□ 2.12
RFC4P35249 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.29■■■□□ 2.12
RFC4P35249 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RFC4P35249 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RFC4P35249 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.29■■■□□ 2.12
RFC4P35249 HSCB-202ENST00000398941 955 ntTSL 2 BASIC28.29■■■□□ 2.12
RFC4P35249 AC026185.1-201ENST00000445748 174 ntBASIC28.29■■■□□ 2.12
RFC4P35249 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RFC4P35249 DBI-210ENST00000542275 757 ntTSL 5 BASIC28.29■■■□□ 2.12
RFC4P35249 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.29■■■□□ 2.12
RFC4P35249 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RFC4P35249 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
RFC4P35249 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RFC4P35249 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 COX20-201ENST00000366528 568 ntTSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RFC4P35249 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.28■■■□□ 2.12
RFC4P35249 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RFC4P35249 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.28■■■□□ 2.12
RFC4P35249 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RFC4P35249 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RFC4P35249 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.27■■■□□ 2.12
RFC4P35249 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.27■■■□□ 2.12
RFC4P35249 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.27■■■□□ 2.12
RFC4P35249 TPRG1LP1-201ENST00000598702 760 ntBASIC28.27■■■□□ 2.12
RFC4P35249 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC28.27■■■□□ 2.12
RFC4P35249 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC28.27■■■□□ 2.12
RFC4P35249 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC28.27■■■□□ 2.12
RFC4P35249 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
RFC4P35249 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
RFC4P35249 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RFC4P35249 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
RFC4P35249 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
RFC4P35249 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.26■■■□□ 2.11
RFC4P35249 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RFC4P35249 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.26■■■□□ 2.11
RFC4P35249 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC28.26■■■□□ 2.11
RFC4P35249 AC104771.1-201ENST00000603335 964 ntBASIC28.26■■■□□ 2.11
RFC4P35249 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.26■■■□□ 2.11
RFC4P35249 AP004607.4-201ENST00000530158 1459 ntBASIC28.26■■■□□ 2.11
RFC4P35249 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RFC4P35249 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.25■■■□□ 2.11
RFC4P35249 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RFC4P35249 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RFC4P35249 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RFC4P35249 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC28.25■■■□□ 2.11
RFC4P35249 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RFC4P35249 LINC01529-204ENST00000636474 1715 ntBASIC28.25■■■□□ 2.11
RFC4P35249 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC28.25■■■□□ 2.11
RFC4P35249 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RFC4P35249 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.24■■■□□ 2.11
RFC4P35249 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC28.24■■■□□ 2.11
RFC4P35249 BID-214ENST00000617586 542 ntTSL 5 BASIC28.24■■■□□ 2.11
RFC4P35249 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC28.24■■■□□ 2.11
RFC4P35249 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.24■■■□□ 2.11
RFC4P35249 AC135731.1-201ENST00000569415 2548 ntBASIC28.24■■■□□ 2.11
RFC4P35249 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RFC4P35249 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
RFC4P35249 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RFC4P35249 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
RFC4P35249 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RFC4P35249 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
RFC4P35249 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RFC4P35249 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.23■■■□□ 2.11
RFC4P35249 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RFC4P35249 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC28.22■■■□□ 2.11
RFC4P35249 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.22■■■□□ 2.11
RFC4P35249 AC004854.2-201ENST00000608450 1441 ntBASIC28.22■■■□□ 2.11
RFC4P35249 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms