Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.51■□□□□ 0.87
ABCD3P28288 AL499627.2-201ENST00000606283 725 ntBASIC20.51■□□□□ 0.87
ABCD3P28288 AL136162.1-201ENST00000607711 1078 ntBASIC20.51■□□□□ 0.87
ABCD3P28288 DUSP8P3-201ENST00000399571 1760 ntBASIC20.51■□□□□ 0.87
ABCD3P28288 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.51■□□□□ 0.87
ABCD3P28288 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.5■□□□□ 0.87
ABCD3P28288 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ABCD3P28288 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.5■□□□□ 0.87
ABCD3P28288 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCD3P28288 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCD3P28288 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ABCD3P28288 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
ABCD3P28288 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
ABCD3P28288 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCD3P28288 AL139246.5-201ENST00000606645 996 ntBASIC20.5■□□□□ 0.87
ABCD3P28288 AC011298.3-201ENST00000615796 283 ntBASIC20.5■□□□□ 0.87
ABCD3P28288 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.5■□□□□ 0.87
ABCD3P28288 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
ABCD3P28288 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.49■□□□□ 0.87
ABCD3P28288 AC135279.3-201ENST00000610945 1311 ntBASIC20.49■□□□□ 0.87
ABCD3P28288 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCD3P28288 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.49■□□□□ 0.87
ABCD3P28288 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 DUSP8P5-201ENST00000422884 1815 ntBASIC20.48■□□□□ 0.87
ABCD3P28288 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCD3P28288 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCD3P28288 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCD3P28288 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.48■□□□□ 0.87
ABCD3P28288 PBX2P1-201ENST00000493219 1291 ntBASIC20.48■□□□□ 0.87
ABCD3P28288 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 AC024257.2-201ENST00000549699 147 ntBASIC20.48■□□□□ 0.87
ABCD3P28288 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCD3P28288 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCD3P28288 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCD3P28288 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCD3P28288 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCD3P28288 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCD3P28288 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCD3P28288 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCD3P28288 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCD3P28288 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.47■□□□□ 0.87
ABCD3P28288 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.47■□□□□ 0.87
ABCD3P28288 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCD3P28288 AC106739.1-201ENST00000617035 715 ntBASIC20.47■□□□□ 0.87
ABCD3P28288 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.47■□□□□ 0.87
ABCD3P28288 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.47■□□□□ 0.87
ABCD3P28288 AC133637.1-201ENST00000624115 1537 ntBASIC20.47■□□□□ 0.87
ABCD3P28288 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.46■□□□□ 0.87
ABCD3P28288 AC136469.2-201ENST00000623944 1028 ntBASIC20.46■□□□□ 0.87
ABCD3P28288 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.46■□□□□ 0.87
ABCD3P28288 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCD3P28288 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
ABCD3P28288 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.45■□□□□ 0.86
ABCD3P28288 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.45■□□□□ 0.86
ABCD3P28288 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.45■□□□□ 0.86
ABCD3P28288 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.45■□□□□ 0.86
ABCD3P28288 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ABCD3P28288 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ABCD3P28288 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
ABCD3P28288 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
ABCD3P28288 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.44■□□□□ 0.86
ABCD3P28288 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
ABCD3P28288 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.44■□□□□ 0.86
ABCD3P28288 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.44■□□□□ 0.86
ABCD3P28288 MIR4767-201ENST00000582827 78 ntBASIC20.44■□□□□ 0.86
ABCD3P28288 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ABCD3P28288 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms