Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC083906.2-201ENST00000511578 360 ntBASIC19.5■□□□□ 0.71
COL8A1P27658 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.5■□□□□ 0.71
COL8A1P27658 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL8A1P27658 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL8A1P27658 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL8A1P27658 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.49■□□□□ 0.71
COL8A1P27658 AL138781.1-201ENST00000566567 1274 ntBASIC19.49■□□□□ 0.71
COL8A1P27658 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.49■□□□□ 0.71
COL8A1P27658 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.49■□□□□ 0.71
COL8A1P27658 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL8A1P27658 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.49■□□□□ 0.71
COL8A1P27658 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL8A1P27658 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.48■□□□□ 0.71
COL8A1P27658 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.48■□□□□ 0.71
COL8A1P27658 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.48■□□□□ 0.71
COL8A1P27658 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.48■□□□□ 0.71
COL8A1P27658 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.48■□□□□ 0.71
COL8A1P27658 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
COL8A1P27658 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.48■□□□□ 0.71
COL8A1P27658 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.48■□□□□ 0.71
COL8A1P27658 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.48■□□□□ 0.71
COL8A1P27658 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COL8A1P27658 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL8A1P27658 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COL8A1P27658 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.47■□□□□ 0.71
COL8A1P27658 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 TSPY6P-201ENST00000448518 926 ntBASIC19.47■□□□□ 0.71
COL8A1P27658 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.47■□□□□ 0.71
COL8A1P27658 DUX4L4-201ENST00000566884 1269 ntBASIC19.47■□□□□ 0.71
COL8A1P27658 AL121832.2-201ENST00000610979 668 ntBASIC19.47■□□□□ 0.71
COL8A1P27658 AL050303.2-201ENST00000619798 666 ntBASIC19.47■□□□□ 0.71
COL8A1P27658 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.47■□□□□ 0.71
COL8A1P27658 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.47■□□□□ 0.71
COL8A1P27658 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL8A1P27658 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
COL8A1P27658 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
COL8A1P27658 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.46■□□□□ 0.71
COL8A1P27658 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.46■□□□□ 0.71
COL8A1P27658 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
COL8A1P27658 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.46■□□□□ 0.71
COL8A1P27658 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL8A1P27658 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.46■□□□□ 0.71
COL8A1P27658 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL8A1P27658 KRT19P1-201ENST00000405746 1186 ntBASIC19.45■□□□□ 0.7
COL8A1P27658 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL8A1P27658 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.45■□□□□ 0.7
COL8A1P27658 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL8A1P27658 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.45■□□□□ 0.7
COL8A1P27658 TPRG1LP1-201ENST00000598702 760 ntBASIC19.45■□□□□ 0.7
COL8A1P27658 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL8A1P27658 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
COL8A1P27658 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.45■□□□□ 0.7
COL8A1P27658 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.44■□□□□ 0.7
COL8A1P27658 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.44■□□□□ 0.7
COL8A1P27658 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.44■□□□□ 0.7
COL8A1P27658 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.44■□□□□ 0.7
COL8A1P27658 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL8A1P27658 AC135731.1-201ENST00000569415 2548 ntBASIC19.44■□□□□ 0.7
COL8A1P27658 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.43■□□□□ 0.7
COL8A1P27658 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.43■□□□□ 0.7
COL8A1P27658 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL8A1P27658 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.43■□□□□ 0.7
COL8A1P27658 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.43■□□□□ 0.7
COL8A1P27658 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms