Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ATF4P18848 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
ATF4P18848 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.42■□□□□ 0.54
ATF4P18848 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.42■□□□□ 0.54
ATF4P18848 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
ATF4P18848 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
ATF4P18848 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.42■□□□□ 0.54
ATF4P18848 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.41■□□□□ 0.54
ATF4P18848 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATF4P18848 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
ATF4P18848 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATF4P18848 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.41■□□□□ 0.54
ATF4P18848 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATF4P18848 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ATF4P18848 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.41■□□□□ 0.54
ATF4P18848 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
ATF4P18848 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
ATF4P18848 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.4■□□□□ 0.54
ATF4P18848 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
ATF4P18848 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.4■□□□□ 0.54
ATF4P18848 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ATF4P18848 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.4■□□□□ 0.54
ATF4P18848 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
ATF4P18848 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC18.4■□□□□ 0.54
ATF4P18848 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
ATF4P18848 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
ATF4P18848 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
ATF4P18848 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.39■□□□□ 0.53
ATF4P18848 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATF4P18848 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.39■□□□□ 0.53
ATF4P18848 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.39■□□□□ 0.53
ATF4P18848 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
ATF4P18848 AC004812.2-201ENST00000611079 2094 ntBASIC18.38■□□□□ 0.53
ATF4P18848 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATF4P18848 HES4-202ENST00000428771 1040 ntTSL 2 BASIC18.38■□□□□ 0.53
ATF4P18848 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATF4P18848 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.37■□□□□ 0.53
ATF4P18848 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
ATF4P18848 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 RARRES2P2-201ENST00000394842 485 ntBASIC18.37■□□□□ 0.53
ATF4P18848 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 RNF126P1-201ENST00000567452 1320 ntBASIC18.37■□□□□ 0.53
ATF4P18848 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.37■□□□□ 0.53
ATF4P18848 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ATF4P18848 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.37■□□□□ 0.53
ATF4P18848 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
ATF4P18848 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.37■□□□□ 0.53
ATF4P18848 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATF4P18848 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATF4P18848 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATF4P18848 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATF4P18848 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATF4P18848 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATF4P18848 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC18.36■□□□□ 0.53
ATF4P18848 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATF4P18848 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ATF4P18848 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATF4P18848 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATF4P18848 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
ATF4P18848 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATF4P18848 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms