Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
PGK1P00558 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PGK1P00558 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PGK1P00558 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
PGK1P00558 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
PGK1P00558 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.98■■□□□ 1.59
PGK1P00558 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.98■■□□□ 1.59
PGK1P00558 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PGK1P00558 AC080038.1-201ENST00000611274 1154 ntBASIC24.98■■□□□ 1.59
PGK1P00558 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PGK1P00558 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.97■■□□□ 1.59
PGK1P00558 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
PGK1P00558 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
PGK1P00558 AC022211.4-201ENST00000625094 2161 ntBASIC24.97■■□□□ 1.59
PGK1P00558 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
PGK1P00558 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PGK1P00558 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.96■■□□□ 1.59
PGK1P00558 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.96■■□□□ 1.59
PGK1P00558 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.96■■□□□ 1.59
PGK1P00558 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PGK1P00558 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PGK1P00558 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PGK1P00558 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.95■■□□□ 1.58
PGK1P00558 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
PGK1P00558 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.95■■□□□ 1.58
PGK1P00558 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.95■■□□□ 1.58
PGK1P00558 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.95■■□□□ 1.58
PGK1P00558 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
PGK1P00558 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.95■■□□□ 1.58
PGK1P00558 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PGK1P00558 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.95■■□□□ 1.58
PGK1P00558 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
PGK1P00558 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
PGK1P00558 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
PGK1P00558 AC006015.1-201ENST00000429970 570 ntBASIC24.94■■□□□ 1.58
PGK1P00558 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.94■■□□□ 1.58
PGK1P00558 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.94■■□□□ 1.58
PGK1P00558 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PGK1P00558 LINC01529-204ENST00000636474 1715 ntBASIC24.93■■□□□ 1.58
PGK1P00558 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
PGK1P00558 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PGK1P00558 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
PGK1P00558 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PGK1P00558 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.93■■□□□ 1.58
PGK1P00558 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.93■■□□□ 1.58
PGK1P00558 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
PGK1P00558 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.92■■□□□ 1.58
PGK1P00558 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.92■■□□□ 1.58
PGK1P00558 AC137761.2-201ENST00000561729 223 ntBASIC24.92■■□□□ 1.58
PGK1P00558 AC145350.3-201ENST00000569033 163 ntBASIC24.92■■□□□ 1.58
PGK1P00558 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.92■■□□□ 1.58
PGK1P00558 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.92■■□□□ 1.58
PGK1P00558 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PGK1P00558 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.92■■□□□ 1.58
PGK1P00558 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.91■■□□□ 1.58
PGK1P00558 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 AC144652.1-201ENST00000609974 1624 ntBASIC24.91■■□□□ 1.58
PGK1P00558 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC24.91■■□□□ 1.58
PGK1P00558 AC016769.1-201ENST00000409132 1010 ntBASIC24.91■■□□□ 1.58
PGK1P00558 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.91■■□□□ 1.58
PGK1P00558 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.91■■□□□ 1.58
PGK1P00558 RAP2CP1-201ENST00000605103 478 ntBASIC24.91■■□□□ 1.58
PGK1P00558 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.91■■□□□ 1.58
PGK1P00558 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PGK1P00558 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PGK1P00558 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.9■■□□□ 1.58
PGK1P00558 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.9■■□□□ 1.58
PGK1P00558 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.9■■□□□ 1.58
PGK1P00558 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms