Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.24■□□□□ 0.99
SEMA3DO95025 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.24■□□□□ 0.99
SEMA3DO95025 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.24■□□□□ 0.99
SEMA3DO95025 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SEMA3DO95025 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SEMA3DO95025 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SEMA3DO95025 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.23■□□□□ 0.99
SEMA3DO95025 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.23■□□□□ 0.99
SEMA3DO95025 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SEMA3DO95025 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.23■□□□□ 0.99
SEMA3DO95025 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEMA3DO95025 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.22■□□□□ 0.99
SEMA3DO95025 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEMA3DO95025 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEMA3DO95025 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.22■□□□□ 0.99
SEMA3DO95025 AL117332.1-201ENST00000622628 974 ntBASIC21.22■□□□□ 0.99
SEMA3DO95025 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.22■□□□□ 0.99
SEMA3DO95025 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.22■□□□□ 0.99
SEMA3DO95025 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SEMA3DO95025 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SEMA3DO95025 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEMA3DO95025 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SEMA3DO95025 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.21■□□□□ 0.99
SEMA3DO95025 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SEMA3DO95025 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SEMA3DO95025 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.21■□□□□ 0.99
SEMA3DO95025 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SEMA3DO95025 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.21■□□□□ 0.99
SEMA3DO95025 MIR3621-201ENST00000580529 85 ntBASIC21.21■□□□□ 0.99
SEMA3DO95025 AL356740.2-201ENST00000601559 647 ntBASIC21.21■□□□□ 0.99
SEMA3DO95025 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.2■□□□□ 0.98
SEMA3DO95025 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.2■□□□□ 0.98
SEMA3DO95025 AC009086.3-201ENST00000623486 1008 ntBASIC21.2■□□□□ 0.98
SEMA3DO95025 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SEMA3DO95025 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.2■□□□□ 0.98
SEMA3DO95025 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEMA3DO95025 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.2■□□□□ 0.98
SEMA3DO95025 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SEMA3DO95025 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
SEMA3DO95025 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEMA3DO95025 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEMA3DO95025 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEMA3DO95025 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.18■□□□□ 0.98
SEMA3DO95025 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEMA3DO95025 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SEMA3DO95025 AL356441.2-201ENST00000443009 864 ntBASIC21.18■□□□□ 0.98
SEMA3DO95025 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.18■□□□□ 0.98
SEMA3DO95025 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEMA3DO95025 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SEMA3DO95025 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.18■□□□□ 0.98
SEMA3DO95025 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.18■□□□□ 0.98
SEMA3DO95025 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.17■□□□□ 0.98
SEMA3DO95025 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SEMA3DO95025 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.17■□□□□ 0.98
SEMA3DO95025 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SEMA3DO95025 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SEMA3DO95025 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.17■□□□□ 0.98
SEMA3DO95025 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SEMA3DO95025 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 C1orf229-201ENST00000623686 2258 ntBASIC21.16■□□□□ 0.98
SEMA3DO95025 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SEMA3DO95025 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SEMA3DO95025 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
SEMA3DO95025 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.16■□□□□ 0.98
SEMA3DO95025 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SEMA3DO95025 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEMA3DO95025 AC241377.3-202ENST00000626088 1088 ntBASIC21.16■□□□□ 0.98
SEMA3DO95025 AC241585.3-202ENST00000628937 1088 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms