Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM13O60858 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.88■■□□□ 1.09
TRIM13O60858 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM13O60858 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
TRIM13O60858 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
TRIM13O60858 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM13O60858 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TRIM13O60858 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM13O60858 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM13O60858 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.86■■□□□ 1.09
TRIM13O60858 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.86■■□□□ 1.09
TRIM13O60858 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.86■■□□□ 1.09
TRIM13O60858 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM13O60858 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM13O60858 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM13O60858 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 AC144652.1-201ENST00000609974 1624 ntBASIC21.85■■□□□ 1.09
TRIM13O60858 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 AC004987.1-201ENST00000428627 508 ntBASIC21.85■■□□□ 1.09
TRIM13O60858 ATP5G2P3-201ENST00000429083 425 ntBASIC21.85■■□□□ 1.09
TRIM13O60858 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM13O60858 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM13O60858 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
TRIM13O60858 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
TRIM13O60858 C11orf96-202ENST00000528572 1834 ntBASIC21.85■■□□□ 1.09
TRIM13O60858 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM13O60858 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TRIM13O60858 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
TRIM13O60858 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM13O60858 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM13O60858 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.84■■□□□ 1.09
TRIM13O60858 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM13O60858 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM13O60858 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 AC007375.3-201ENST00000600936 2314 ntBASIC21.84■■□□□ 1.09
TRIM13O60858 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM13O60858 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM13O60858 AC080038.3-201ENST00000623346 1952 ntBASIC21.83■■□□□ 1.09
TRIM13O60858 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.83■■□□□ 1.09
TRIM13O60858 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM13O60858 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
TRIM13O60858 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
TRIM13O60858 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
TRIM13O60858 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM13O60858 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM13O60858 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
TRIM13O60858 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.83■■□□□ 1.08
TRIM13O60858 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM13O60858 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.83■■□□□ 1.08
TRIM13O60858 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
TRIM13O60858 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM13O60858 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM13O60858 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM13O60858 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.82■■□□□ 1.08
TRIM13O60858 AC010980.1-201ENST00000587192 1142 ntBASIC21.82■■□□□ 1.08
TRIM13O60858 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
TRIM13O60858 AC087742.1-201ENST00000575880 1738 ntBASIC21.82■■□□□ 1.08
TRIM13O60858 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM13O60858 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM13O60858 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TRIM13O60858 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM13O60858 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM13O60858 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms