Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRKNO60260 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
PRKNO60260 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRKNO60260 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRKNO60260 FP325331.1-202ENST00000623531 1380 ntBASIC20.7■□□□□ 0.9
PRKNO60260 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PRKNO60260 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRKNO60260 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRKNO60260 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PRKNO60260 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.69■□□□□ 0.9
PRKNO60260 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 DUX4L4-201ENST00000566884 1269 ntBASIC20.69■□□□□ 0.9
PRKNO60260 AL138724.1-201ENST00000606771 1088 ntBASIC20.69■□□□□ 0.9
PRKNO60260 AC011298.3-201ENST00000615796 283 ntBASIC20.69■□□□□ 0.9
PRKNO60260 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRKNO60260 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 LINC01529-204ENST00000636474 1715 ntBASIC20.68■□□□□ 0.9
PRKNO60260 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.68■□□□□ 0.9
PRKNO60260 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.68■□□□□ 0.9
PRKNO60260 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.68■□□□□ 0.9
PRKNO60260 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.68■□□□□ 0.9
PRKNO60260 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PRKNO60260 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRKNO60260 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.67■□□□□ 0.9
PRKNO60260 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRKNO60260 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.67■□□□□ 0.9
PRKNO60260 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRKNO60260 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
PRKNO60260 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKNO60260 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKNO60260 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.67■□□□□ 0.9
PRKNO60260 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRKNO60260 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRKNO60260 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKNO60260 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRKNO60260 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKNO60260 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.67■□□□□ 0.9
PRKNO60260 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PRKNO60260 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PRKNO60260 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.66■□□□□ 0.9
PRKNO60260 SUDS3P1-201ENST00000505831 966 ntBASIC20.66■□□□□ 0.9
PRKNO60260 AC136469.2-201ENST00000623944 1028 ntBASIC20.66■□□□□ 0.9
PRKNO60260 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.66■□□□□ 0.9
PRKNO60260 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRKNO60260 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.66■□□□□ 0.9
PRKNO60260 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.66■□□□□ 0.9
PRKNO60260 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.66■□□□□ 0.9
PRKNO60260 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.66■□□□□ 0.9
PRKNO60260 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKNO60260 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKNO60260 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.65■□□□□ 0.9
PRKNO60260 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKNO60260 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.65■□□□□ 0.9
PRKNO60260 EDA-201ENST00000338901 1233 ntBASIC20.65■□□□□ 0.9
PRKNO60260 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PRKNO60260 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.65■□□□□ 0.9
PRKNO60260 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.65■□□□□ 0.9
PRKNO60260 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRKNO60260 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
PRKNO60260 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PRKNO60260 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
PRKNO60260 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PRKNO60260 AC092068.2-201ENST00000590491 1708 ntBASIC20.64■□□□□ 0.9
PRKNO60260 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
PRKNO60260 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PRKNO60260 AL499627.2-201ENST00000606283 725 ntBASIC20.64■□□□□ 0.89
PRKNO60260 AL355001.2-201ENST00000620617 1191 ntBASIC20.64■□□□□ 0.89
PRKNO60260 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.64■□□□□ 0.89
PRKNO60260 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PRKNO60260 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.64■□□□□ 0.89
PRKNO60260 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PRKNO60260 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
PRKNO60260 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms