Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH4O15457 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH4O15457 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.11■■□□□ 1.61
MSH4O15457 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH4O15457 AL355001.2-201ENST00000620617 1191 ntBASIC25.11■■□□□ 1.61
MSH4O15457 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
MSH4O15457 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH4O15457 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH4O15457 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH4O15457 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH4O15457 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
MSH4O15457 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH4O15457 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
MSH4O15457 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.09■■□□□ 1.61
MSH4O15457 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MSH4O15457 AP001330.3-201ENST00000520123 633 ntBASIC25.09■■□□□ 1.61
MSH4O15457 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH4O15457 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
MSH4O15457 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH4O15457 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH4O15457 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 AF213884.3-201ENST00000563833 479 ntBASIC25.08■■□□□ 1.61
MSH4O15457 AL136967.2-201ENST00000623968 743 ntBASIC25.08■■□□□ 1.61
MSH4O15457 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MSH4O15457 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.08■■□□□ 1.61
MSH4O15457 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.08■■□□□ 1.6
MSH4O15457 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH4O15457 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH4O15457 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.07■■□□□ 1.6
MSH4O15457 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH4O15457 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.07■■□□□ 1.6
MSH4O15457 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.07■■□□□ 1.6
MSH4O15457 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MSH4O15457 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.07■■□□□ 1.6
MSH4O15457 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 DUSP8P3-201ENST00000399571 1760 ntBASIC25.06■■□□□ 1.6
MSH4O15457 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
MSH4O15457 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH4O15457 MIR939-201ENST00000401314 82 ntBASIC25.06■■□□□ 1.6
MSH4O15457 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH4O15457 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH4O15457 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
MSH4O15457 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MSH4O15457 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH4O15457 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.05■■□□□ 1.6
MSH4O15457 AC142381.2-201ENST00000566120 298 ntBASIC25.05■■□□□ 1.6
MSH4O15457 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.05■■□□□ 1.6
MSH4O15457 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH4O15457 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
MSH4O15457 AC019069.1-201ENST00000610008 1333 ntBASIC25.05■■□□□ 1.6
MSH4O15457 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH4O15457 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH4O15457 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH4O15457 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.05■■□□□ 1.6
MSH4O15457 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
MSH4O15457 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH4O15457 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH4O15457 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH4O15457 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH4O15457 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH4O15457 AC004687.1-201ENST00000579003 1625 ntBASIC25.04■■□□□ 1.6
MSH4O15457 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH4O15457 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
MSH4O15457 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
MSH4O15457 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
MSH4O15457 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH4O15457 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 SLC47A1P1-202ENST00000449666 945 ntBASIC25.03■■□□□ 1.6
MSH4O15457 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH4O15457 AC008764.7-201ENST00000593779 1081 ntBASIC25.03■■□□□ 1.6
MSH4O15457 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.03■■□□□ 1.6
MSH4O15457 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.03■■□□□ 1.6
MSH4O15457 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH4O15457 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH4O15457 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH4O15457 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms