Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A5A8TX70 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A5A8TX70 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A5A8TX70 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 AL158047.1-201ENST00000445918 881 ntBASIC17.59■□□□□ 0.41
COL6A5A8TX70 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 SHF-208ENST00000560734 1731 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
COL6A5A8TX70 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 AL022069.1-201ENST00000568025 1636 ntBASIC17.58■□□□□ 0.41
COL6A5A8TX70 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A5A8TX70 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 AC133552.2-202ENST00000575694 574 ntBASIC17.58■□□□□ 0.41
COL6A5A8TX70 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 AC006058.3-201ENST00000606217 1069 ntBASIC17.58■□□□□ 0.41
COL6A5A8TX70 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.58■□□□□ 0.41
COL6A5A8TX70 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A5A8TX70 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.58■□□□□ 0.4
COL6A5A8TX70 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A5A8TX70 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A5A8TX70 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A5A8TX70 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A5A8TX70 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL6A5A8TX70 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.58■□□□□ 0.4
COL6A5A8TX70 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A5A8TX70 BX005040.4-201ENST00000637145 1518 ntBASIC17.58■□□□□ 0.4
COL6A5A8TX70 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 AC141586.4-201ENST00000624558 1573 ntBASIC17.57■□□□□ 0.4
COL6A5A8TX70 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.57■□□□□ 0.4
COL6A5A8TX70 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A5A8TX70 AC231657.2-201ENST00000624556 255 ntBASIC17.57■□□□□ 0.4
COL6A5A8TX70 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A5A8TX70 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A5A8TX70 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A5A8TX70 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 CNN2P6-201ENST00000439038 900 ntBASIC17.56■□□□□ 0.4
COL6A5A8TX70 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A5A8TX70 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.56■□□□□ 0.4
COL6A5A8TX70 AC073912.3-201ENST00000624414 853 ntBASIC17.56■□□□□ 0.4
COL6A5A8TX70 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A5A8TX70 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A5A8TX70 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
COL6A5A8TX70 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 ESRRAP1-201ENST00000400596 1257 ntBASIC17.55■□□□□ 0.4
COL6A5A8TX70 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL6A5A8TX70 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 AC096887.2-201ENST00000623443 1957 ntBASIC17.55■□□□□ 0.4
COL6A5A8TX70 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 UNC93B4-201ENST00000505679 747 ntBASIC17.55■□□□□ 0.4
COL6A5A8TX70 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A5A8TX70 AC142381.4-202ENST00000563973 229 ntBASIC17.55■□□□□ 0.4
COL6A5A8TX70 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A5A8TX70 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A5A8TX70 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms