Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 MIR2278-201ENST00000516344 96 ntBASIC20.74■□□□□ 0.91
VPS8Q8N3P4 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 GRAMD4P6-201ENST00000556999 244 ntBASIC20.74■□□□□ 0.91
VPS8Q8N3P4 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 AC006986.1-201ENST00000612764 241 ntBASIC20.74■□□□□ 0.91
VPS8Q8N3P4 AL592295.4-201ENST00000636161 997 ntTSL 4 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 AC060814.4-201ENST00000594169 2163 ntBASIC20.74■□□□□ 0.91
VPS8Q8N3P4 FAM114A2-211ENST00000520667 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 PLXNA4-203ENST00000378539 2004 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 GSDMB-201ENST00000309481 1500 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 JAML-202ENST00000356289 1944 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 PABPC1P2-201ENST00000471997 1805 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 MRPL27-201ENST00000225969 716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC024475.2-201ENST00000312173 879 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 NQO2-204ENST00000380454 851 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 RBM14-205ENST00000443702 732 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 MARK2P17-201ENST00000498560 841 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 HNRNPA1P4-201ENST00000509706 756 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC136604.2-201ENST00000500262 1966 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC008536.3-201ENST00000623282 1599 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 MIPEPP1-201ENST00000413533 2027 ntBASIC20.73■□□□□ 0.91
VPS8Q8N3P4 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
VPS8Q8N3P4 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 POM121L14P-201ENST00000406100 1558 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AP001331.1-201ENST00000413008 1015 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AC010677.1-201ENST00000441690 412 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 RPSAP16-201ENST00000447583 821 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 HNRNPA1P16-201ENST00000575692 955 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 CYP2B7P-201ENST00000541697 1476 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 CLUHP8-201ENST00000547527 1485 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 HSPA8P9-201ENST00000485881 1943 ntBASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 ARHGEF9-235ENST00000637723 2146 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS8Q8N3P4 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 SNORA30.1-201ENST00000363193 129 ntBASIC20.71■□□□□ 0.91
VPS8Q8N3P4 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 KRT18P44-201ENST00000416086 1285 ntBASIC20.71■□□□□ 0.91
VPS8Q8N3P4 LAMTOR5-203ENST00000474861 1154 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
VPS8Q8N3P4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms