Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SIRPB3P-201ENST00000340424 1216 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SAP18P2-201ENST00000434334 459 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 POLR2LP1-206ENST00000444785 187 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 RN7SL838P-201ENST00000481676 295 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 NAT9-219ENST00000582524 573 ntTSL 4 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CLPP-205ENST00000596605 646 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC090386.2-201ENST00000623010 1039 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 TCAM1P-207ENST00000485295 1537 ntBASIC13.16□□□□□ -0.3
COL28A1Q2UY09 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 ODCP-201ENST00000459650 1639 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AC022080.1-201ENST00000366255 781 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 HDGF-202ENST00000368206 960 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 RPL18AP15-201ENST00000430258 517 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 RN7SL363P-201ENST00000482412 273 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AC100858.1-201ENST00000514059 1228 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 BAK1P2-201ENST00000532665 631 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AL132994.1-201ENST00000554098 400 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 MIR4746-201ENST00000579802 71 ntBASIC13.15□□□□□ -0.3
COL28A1Q2UY09 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 ESR1-214ENST00000638569 132 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL28A1Q2UY09 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms