Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.36□□□□□ -0.27
PCNAP12004 AL353637.1-201ENST00000451571 732 ntBASIC13.36□□□□□ -0.27
PCNAP12004 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.36□□□□□ -0.27
PCNAP12004 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 RTN3P1-201ENST00000536295 711 ntBASIC13.36□□□□□ -0.27
PCNAP12004 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 AC026803.1-201ENST00000569130 274 ntBASIC13.36□□□□□ -0.27
PCNAP12004 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 AL031673.1-201ENST00000611460 466 ntBASIC13.36□□□□□ -0.27
PCNAP12004 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.36□□□□□ -0.27
PCNAP12004 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
PCNAP12004 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
PCNAP12004 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC13.36□□□□□ -0.27
PCNAP12004 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC13.36□□□□□ -0.27
PCNAP12004 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.36□□□□□ -0.27
PCNAP12004 AC104758.3-203ENST00000562938 2123 ntBASIC13.36□□□□□ -0.27
PCNAP12004 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
PCNAP12004 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.36□□□□□ -0.27
PCNAP12004 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.36□□□□□ -0.27
PCNAP12004 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.35□□□□□ -0.27
PCNAP12004 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 OR2K2-202ENST00000374428 1038 ntBASIC13.35□□□□□ -0.27
PCNAP12004 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
PCNAP12004 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.35□□□□□ -0.27
PCNAP12004 RPL8P2-201ENST00000430538 502 ntBASIC13.35□□□□□ -0.27
PCNAP12004 CALR4P-201ENST00000431943 946 ntBASIC13.35□□□□□ -0.27
PCNAP12004 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 AC098934.1-203ENST00000442868 1262 ntBASIC13.35□□□□□ -0.27
PCNAP12004 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 DUTP3-201ENST00000450025 415 ntBASIC13.35□□□□□ -0.27
PCNAP12004 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.35□□□□□ -0.27
PCNAP12004 AP000358.1-201ENST00000456260 156 ntBASIC13.35□□□□□ -0.27
PCNAP12004 RN7SL258P-201ENST00000478664 300 ntBASIC13.35□□□□□ -0.27
PCNAP12004 NUP210P1-202ENST00000504322 710 ntBASIC13.35□□□□□ -0.27
PCNAP12004 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.35□□□□□ -0.27
PCNAP12004 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
PCNAP12004 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.35□□□□□ -0.27
PCNAP12004 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
PCNAP12004 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
PCNAP12004 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
PCNAP12004 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
PCNAP12004 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
PCNAP12004 FAM90A2P-201ENST00000511144 1395 ntBASIC13.34□□□□□ -0.27
PCNAP12004 FAM90A25P-201ENST00000528404 1395 ntBASIC13.34□□□□□ -0.27
PCNAP12004 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms