Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 SMG8-202ENST00000543872 3477 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CU639417.6-202ENST00000624872 3241 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ANKRD20A7P-201ENST00000402318 2414 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 CTCFL-204ENST00000422869 2966 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 AC005154.3-201ENST00000419639 1393 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 EGLN3-205ENST00000547327 2849 ntBASIC13.31□□□□□ -0.28
CCDC28BQ9BUN5 ZNF555-203ENST00000591539 2270 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 OR8T1P-201ENST00000421347 918 ntBASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 RN7SL530P-201ENST00000485097 298 ntBASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 AC027796.2-201ENST00000575326 344 ntBASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CSNK1G1-209ENST00000634811 2592 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 SERPINA1-205ENST00000404814 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 MGAT4EP-201ENST00000330493 2810 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CCDC28BQ9BUN5 KIAA1324-210ENST00000529753 2903 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 AL450468.2-201ENST00000565955 1889 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 TPO-204ENST00000382198 2283 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 MAPK10-262ENST00000641051 5738 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 RFX5-202ENST00000368870 2459 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 AC021723.1-201ENST00000486306 515 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 MIR3188-201ENST00000583494 85 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 IGHV3-72-202ENST00000621503 303 ntBASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CCDC28BQ9BUN5 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms