Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC016397.2-201ENST00000624848 1985 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 LAP3P2-201ENST00000454686 1454 ntBASIC13.19□□□□□ -0.3
COL28A1Q2UY09 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 HLA-DMA-202ENST00000395303 1007 ntBASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 SNRPD2P2-201ENST00000473818 333 ntBASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 TMA16-204ENST00000508268 608 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.19□□□□□ -0.3
COL28A1Q2UY09 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL28A1Q2UY09 AC083964.2-201ENST00000623988 2396 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 CICP16-201ENST00000502609 2813 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 HMGA1P2-201ENST00000430198 324 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AL954722.1-201ENST00000431238 259 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 RN7SL69P-201ENST00000468423 272 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 NDUFB10P1-201ENST00000567319 521 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AC132812.1-201ENST00000583145 892 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AL591471.1-201ENST00000621855 229 ntBASIC13.18□□□□□ -0.3
COL28A1Q2UY09 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms