Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.39□□□□□ -0.27
PCNAP12004 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 AC022497.1-201ENST00000624916 3691 ntBASIC13.39□□□□□ -0.27
PCNAP12004 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.39□□□□□ -0.27
PCNAP12004 AC005722.1-201ENST00000431878 964 ntBASIC13.39□□□□□ -0.27
PCNAP12004 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.39□□□□□ -0.27
PCNAP12004 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 ACTG1P17-201ENST00000558391 1119 ntBASIC13.39□□□□□ -0.27
PCNAP12004 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 Z98885.3-201ENST00000624882 1757 ntBASIC13.39□□□□□ -0.27
PCNAP12004 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 AC090114.2-201ENST00000608477 7054 ntBASIC13.39□□□□□ -0.27
PCNAP12004 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
PCNAP12004 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
PCNAP12004 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
PCNAP12004 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 AC022400.8-201ENST00000623453 3599 ntBASIC13.38□□□□□ -0.27
PCNAP12004 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 AC024075.2-201ENST00000598112 1473 ntBASIC13.38□□□□□ -0.27
PCNAP12004 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.38□□□□□ -0.27
PCNAP12004 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 AL583805.1-201ENST00000391389 531 ntBASIC13.38□□□□□ -0.27
PCNAP12004 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.38□□□□□ -0.27
PCNAP12004 PDIA3P2-201ENST00000428073 158 ntBASIC13.38□□□□□ -0.27
PCNAP12004 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.38□□□□□ -0.27
PCNAP12004 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 AC114947.1-202ENST00000514136 344 ntBASIC13.38□□□□□ -0.27
PCNAP12004 AC024681.1-201ENST00000521917 487 ntBASIC13.38□□□□□ -0.27
PCNAP12004 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
PCNAP12004 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
PCNAP12004 AL161670.2-201ENST00000557650 1227 ntBASIC13.38□□□□□ -0.27
PCNAP12004 AC132825.4-202ENST00000578792 434 ntBASIC13.38□□□□□ -0.27
PCNAP12004 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 AL356740.1-201ENST00000602192 1297 ntBASIC13.38□□□□□ -0.27
PCNAP12004 AC007326.1-201ENST00000604539 458 ntBASIC13.38□□□□□ -0.27
PCNAP12004 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 AP001505.2-201ENST00000616815 443 ntBASIC13.38□□□□□ -0.27
PCNAP12004 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.38□□□□□ -0.27
PCNAP12004 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
PCNAP12004 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
PCNAP12004 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
PCNAP12004 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms