Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
RAE1P78406 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC12.91□□□□□ -0.34
RAE1P78406 DDX12P-201ENST00000432996 2947 ntBASIC12.91□□□□□ -0.34
RAE1P78406 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RAE1P78406 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC12.91□□□□□ -0.34
RAE1P78406 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
RAE1P78406 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
RAE1P78406 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 AL031595.1-201ENST00000623969 4709 ntBASIC12.9□□□□□ -0.34
RAE1P78406 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
RAE1P78406 AL118506.1-201ENST00000601296 3082 ntBASIC12.9□□□□□ -0.34
RAE1P78406 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.9□□□□□ -0.34
RAE1P78406 SOD2-202ENST00000367054 815 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC12.9□□□□□ -0.34
RAE1P78406 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.9□□□□□ -0.34
RAE1P78406 AC041040.1-201ENST00000425197 460 ntBASIC12.9□□□□□ -0.34
RAE1P78406 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.9□□□□□ -0.34
RAE1P78406 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.9□□□□□ -0.34
RAE1P78406 HINT1-205ENST00000508488 703 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 AC100858.1-201ENST00000514059 1228 ntBASIC12.9□□□□□ -0.34
RAE1P78406 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 NEU3-207ENST00000534628 746 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC12.9□□□□□ -0.34
RAE1P78406 NT5C-204ENST00000578337 582 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.9□□□□□ -0.34
RAE1P78406 AC138894.2-201ENST00000602838 371 ntBASIC12.9□□□□□ -0.34
RAE1P78406 AC007250.1-201ENST00000608934 338 ntBASIC12.9□□□□□ -0.34
RAE1P78406 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 AC006144.1-201ENST00000424220 1600 ntBASIC12.9□□□□□ -0.34
RAE1P78406 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 C2-206ENST00000442278 2434 ntTSL 2 BASIC12.9□□□□□ -0.34
RAE1P78406 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
RAE1P78406 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
RAE1P78406 TNRC18P1-201ENST00000502875 3650 ntBASIC12.9□□□□□ -0.35
RAE1P78406 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC12.9□□□□□ -0.35
RAE1P78406 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.35
RAE1P78406 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.89□□□□□ -0.35
RAE1P78406 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 RHBDL2-201ENST00000289248 2129 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
RAE1P78406 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC12.89□□□□□ -0.35
RAE1P78406 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC12.89□□□□□ -0.35
RAE1P78406 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 AC103563.1-201ENST00000429316 123 ntBASIC12.89□□□□□ -0.35
RAE1P78406 CHCHD2P9-201ENST00000461726 456 ntBASIC12.89□□□□□ -0.35
RAE1P78406 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.89□□□□□ -0.35
RAE1P78406 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 EEF1GP8-201ENST00000506566 1154 ntBASIC12.89□□□□□ -0.35
RAE1P78406 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
RAE1P78406 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC12.89□□□□□ -0.35
RAE1P78406 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 AC007952.4-201ENST00000573866 637 ntBASIC12.89□□□□□ -0.35
RAE1P78406 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.89□□□□□ -0.35
RAE1P78406 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC12.89□□□□□ -0.35
RAE1P78406 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC12.89□□□□□ -0.35
RAE1P78406 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.89□□□□□ -0.35
RAE1P78406 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
RAE1P78406 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
RAE1P78406 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms