Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 SLC36A4-201ENST00000326402 6012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 SARS-202ENST00000369923 1882 ntTSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 VDR-202ENST00000395324 4762 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 GDA-203ENST00000376986 1771 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
TPM4P67936 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.4■□□□□ 0.06
TPM4P67936 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.4■□□□□ 0.06
TPM4P67936 TMEM14DP-201ENST00000422205 345 ntBASIC15.4■□□□□ 0.06
TPM4P67936 SCARNA21-201ENST00000517026 139 ntBASIC15.4■□□□□ 0.06
TPM4P67936 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
TPM4P67936 AP000812.2-201ENST00000538934 718 ntBASIC15.4■□□□□ 0.06
TPM4P67936 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.4■□□□□ 0.06
TPM4P67936 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC15.4■□□□□ 0.06
TPM4P67936 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.4■□□□□ 0.06
TPM4P67936 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC15.4■□□□□ 0.06
TPM4P67936 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 MICA-210ENST00000616296 2260 ntTSL 5 BASIC15.4■□□□□ 0.06
TPM4P67936 SH3RF2-206ENST00000511217 5607 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TPM4P67936 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC15.39■□□□□ 0.05
TPM4P67936 DNM1P41-201ENST00000623634 3350 ntBASIC15.39■□□□□ 0.05
TPM4P67936 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC15.39■□□□□ 0.05
TPM4P67936 ABCA3-201ENST00000301732 6609 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.39■□□□□ 0.05
TPM4P67936 AC006987.1-201ENST00000413610 527 ntBASIC15.39■□□□□ 0.05
TPM4P67936 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC15.39■□□□□ 0.05
TPM4P67936 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 AC007279.1-201ENST00000448547 837 ntBASIC15.39■□□□□ 0.05
TPM4P67936 CTBP2P5-201ENST00000454986 1264 ntBASIC15.39■□□□□ 0.05
TPM4P67936 RN7SL277P-201ENST00000481521 288 ntBASIC15.39■□□□□ 0.05
TPM4P67936 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.39■□□□□ 0.05
TPM4P67936 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.39■□□□□ 0.05
TPM4P67936 MIR3940-201ENST00000579148 102 ntBASIC15.39■□□□□ 0.05
TPM4P67936 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TPM4P67936 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC15.39■□□□□ 0.05
TPM4P67936 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TPM4P67936 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TPM4P67936 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC15.39■□□□□ 0.05
TPM4P67936 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TPM4P67936 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC15.38■□□□□ 0.05
TPM4P67936 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TPM4P67936 ADAMTS9-210ENST00000498707 7624 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TPM4P67936 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TPM4P67936 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TPM4P67936 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms