Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 LILRP2-202ENST00000413572 1383 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC16■□□□□ 0.15
HLA-DOAP06340 GH1-203ENST00000351388 685 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DOAP06340 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 SNORA50D-201ENST00000408059 134 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 PHBP10-201ENST00000416467 784 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 MTHFD2P7-201ENST00000483867 983 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 OR4A49P-201ENST00000527050 632 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 AC004801.1-201ENST00000549557 360 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 KRT8P34-201ENST00000577607 1044 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 AC048382.6-201ENST00000621980 1223 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 SNORA50D-202ENST00000627561 132 ntBASIC16■□□□□ 0.15
HLA-DOAP06340 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HLA-DOAP06340 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HLA-DOAP06340 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DOAP06340 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.99■□□□□ 0.15
HLA-DOAP06340 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 NME1-209ENST00000511355 1645 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 HDGF-202ENST00000368206 960 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CCL19-202ENST00000378800 414 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 HNRNPA3P12-201ENST00000437410 1063 ntBASIC15.99■□□□□ 0.15
HLA-DOAP06340 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 SNORA47-201ENST00000458862 138 ntBASIC15.99■□□□□ 0.15
HLA-DOAP06340 IGHVII-74-1-201ENST00000517572 241 ntBASIC15.99■□□□□ 0.15
HLA-DOAP06340 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.99■□□□□ 0.15
HLA-DOAP06340 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 PTN-202ENST00000393083 1599 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DOAP06340 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HLA-DOAP06340 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DOAP06340 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DOAP06340 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms