Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 CHRNA7-223ENST00000637033 3204 ntTSL 5 BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
AMBRA1Q9C0C7 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 DPM3-202ENST00000368399 517 ntBASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TUBB2BP1-201ENST00000404155 871 ntBASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 AC078875.1-201ENST00000431907 724 ntBASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 AC093752.3-201ENST00000567343 901 ntBASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 MIR193BHG-211ENST00000641433 5365 ntBASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.87□□□□□ -0.35
AMBRA1Q9C0C7 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 AC092053.3-201ENST00000641308 4975 ntBASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 KIAA1958-202ENST00000374244 2643 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 MFSD11-201ENST00000336509 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
AMBRA1Q9C0C7 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms