Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 OR4C14P-201ENST00000440929 923 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC13.12□□□□□ -0.31
CLDN6P56747 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC13.12□□□□□ -0.31
CLDN6P56747 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC13.12□□□□□ -0.31
CLDN6P56747 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 AC026120.2-201ENST00000617239 309 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 MIR6125-201ENST00000618986 96 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 MEP1AP1-201ENST00000636082 1097 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 AL365181.3-201ENST00000605886 3222 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLDN6P56747 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLDN6P56747 AC152010.1-201ENST00000415779 2006 ntBASIC13.12□□□□□ -0.31
CLDN6P56747 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
CLDN6P56747 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLDN6P56747 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLDN6P56747 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 OLA1P2-201ENST00000395519 1264 ntBASIC13.11□□□□□ -0.31
CLDN6P56747 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 RPL14-203ENST00000416518 812 ntTSL 3 BASIC13.11□□□□□ -0.31
CLDN6P56747 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 ISL1-203ENST00000511384 981 ntTSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 MIR5091-201ENST00000578707 93 ntBASIC13.11□□□□□ -0.31
CLDN6P56747 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CLDN6P56747 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CLDN6P56747 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CLDN6P56747 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC13.11□□□□□ -0.31
CLDN6P56747 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLDN6P56747 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms