Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DOAP06340 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 ABCD1P2-201ENST00000429313 1601 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 IFNWP2-201ENST00000431203 580 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 BCL2L12P1-201ENST00000508390 733 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 IGHEP2-201ENST00000519308 1256 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 SRPK2P-201ENST00000523408 1100 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 HNRNPA1P16-201ENST00000575692 955 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 MIR5091-201ENST00000578707 93 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 RN7SL162P-201ENST00000579233 292 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 Z82244.1-201ENST00000631502 840 ntBASIC16.02■□□□□ 0.16
HLA-DOAP06340 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DOAP06340 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DOAP06340 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 MANEA-AS1-201ENST00000564541 2268 ntBASIC16.02■□□□□ 0.15
HLA-DOAP06340 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DOAP06340 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC16.02■□□□□ 0.15
HLA-DOAP06340 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DOAP06340 AC023794.5-201ENST00000564380 2157 ntBASIC16.02■□□□□ 0.15
HLA-DOAP06340 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC16.02■□□□□ 0.15
HLA-DOAP06340 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC16.02■□□□□ 0.15
HLA-DOAP06340 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AC020931.1-201ENST00000589622 1346 ntBASIC16.01■□□□□ 0.15
HLA-DOAP06340 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 RPL29P2-201ENST00000488409 460 ntBASIC16.01■□□□□ 0.15
HLA-DOAP06340 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 CA6-205ENST00000480186 1493 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DOAP06340 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DOAP06340 KRT8P38-201ENST00000441370 1430 ntBASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms