Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 PER1-202ENST00000354903 3115 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA1P55317 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA1P55317 AOC4P-203ENST00000566825 2289 ntBASIC13.27□□□□□ -0.28
FOXA1P55317 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC13.27□□□□□ -0.28
FOXA1P55317 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA1P55317 MLX-203ENST00000435881 2428 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 GGTLC4P-201ENST00000402176 664 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 RPL3P2-204ENST00000413027 1203 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 AL353637.1-201ENST00000451571 732 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.27□□□□□ -0.29
FOXA1P55317 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 COQ10BP2-201ENST00000513804 724 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 PHBP15-201ENST00000574228 665 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.27□□□□□ -0.29
FOXA1P55317 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.27□□□□□ -0.29
FOXA1P55317 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 TRNAU1AP-201ENST00000373830 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 POM121L4P-202ENST00000427789 1891 ntBASIC13.27□□□□□ -0.29
FOXA1P55317 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 CSTF2-201ENST00000372972 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
FOXA1P55317 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA1P55317 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.29
FOXA1P55317 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC13.26□□□□□ -0.29
FOXA1P55317 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 RPS2P32-201ENST00000439199 892 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 AC005077.3-201ENST00000449614 213 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 AC073150.1-201ENST00000450406 1084 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 PFN1P12-201ENST00000455938 534 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 KRT8P31-201ENST00000504812 1408 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 AL022328.3-201ENST00000607943 679 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC13.26□□□□□ -0.29
FOXA1P55317 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 FPGT-202ENST00000370898 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms