Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 PSAT1P2-201ENST00000426107 972 ntBASIC14.47□□□□□ -0.09
BDNFP23560 RPL13AP19-201ENST00000434320 584 ntBASIC14.47□□□□□ -0.09
BDNFP23560 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.47□□□□□ -0.09
BDNFP23560 RN7SL351P-201ENST00000469306 248 ntBASIC14.47□□□□□ -0.09
BDNFP23560 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.47□□□□□ -0.09
BDNFP23560 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 AC008972.2-201ENST00000606587 494 ntBASIC14.47□□□□□ -0.09
BDNFP23560 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.47□□□□□ -0.09
BDNFP23560 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.47□□□□□ -0.09
BDNFP23560 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 ABCD1P2-201ENST00000429313 1601 ntBASIC14.47□□□□□ -0.09
BDNFP23560 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
BDNFP23560 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 ERG-211ENST00000453032 1595 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.47□□□□□ -0.09
BDNFP23560 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.47□□□□□ -0.09
BDNFP23560 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
BDNFP23560 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
BDNFP23560 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
BDNFP23560 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 RHOC-205ENST00000369636 786 ntTSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 SNU13-204ENST00000402458 462 ntTSL 3 BASIC14.46□□□□□ -0.09
BDNFP23560 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 GCSHP3-201ENST00000431120 391 ntBASIC14.46□□□□□ -0.09
BDNFP23560 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
BDNFP23560 PFN2-212ENST00000490975 858 ntTSL 4 BASIC14.46□□□□□ -0.09
BDNFP23560 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.46□□□□□ -0.09
BDNFP23560 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.46□□□□□ -0.09
BDNFP23560 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 AC090136.2-201ENST00000517809 420 ntBASIC14.46□□□□□ -0.09
BDNFP23560 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 TREHP1-201ENST00000531328 465 ntBASIC14.46□□□□□ -0.09
BDNFP23560 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 AL359219.1-201ENST00000556311 934 ntBASIC14.46□□□□□ -0.09
BDNFP23560 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
BDNFP23560 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 HLA-C-210ENST00000640219 976 ntBASIC14.46□□□□□ -0.09
BDNFP23560 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
BDNFP23560 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
BDNFP23560 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
BDNFP23560 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
BDNFP23560 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
BDNFP23560 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
BDNFP23560 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.46□□□□□ -0.1
BDNFP23560 KRT8P42-201ENST00000405771 1399 ntBASIC14.46□□□□□ -0.1
BDNFP23560 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
BDNFP23560 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms