Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 SNORD23-201ENST00000408876 110 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 AC092570.1-201ENST00000414446 469 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 AC025594.1-201ENST00000469533 543 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 FAM86KP-201ENST00000509817 987 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 NAV1-210ENST00000593583 726 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 GGNBP1-204ENST00000613113 887 ntBASIC16.07■□□□□ 0.16
HLA-DOAP06340 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DOAP06340 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DOAP06340 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 AL009178.2-201ENST00000597278 2719 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 SERF2-204ENST00000402131 586 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 AF274858.1-201ENST00000406288 372 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 SDCBP2P1-201ENST00000416115 614 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 AC010086.2-201ENST00000428616 226 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 PGK1P2-201ENST00000431702 1214 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 NME6-208ENST00000435684 599 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ZNF877P-201ENST00000437614 612 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 AC092896.1-201ENST00000465850 380 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 NDUFB2P1-201ENST00000506966 295 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HLA-DOAP06340 AC011474.4-201ENST00000623523 2076 ntBASIC16.06■□□□□ 0.16
HLA-DOAP06340 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DOAP06340 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DOAP06340 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DOAP06340 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms